LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi26g00057	ATGGCTGGGAAGGAAGAGAATCGAATATTTGTTGGAGGGTTGTCTTGGGACGTTACCGAGCGTCAGCTTGAGCATGCGTTTGGTCGCTACGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGAGATACTGGCCGTCCACGTGGATTTGGGTTTATTACGTTTGCAGACCGTAGGGGAATGGAGGATGCTATCAAGGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCAGTCAACAAGGCACAGCCCAAGATGGGGGGTGATGATGTAGACCAAGGTTACAGAGGTGGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGGGTTGGAGATAGGATAGGACAGGATGACTGTTTCAAATGTGGTCGTCCAGGGCACTGGGCCCGAGATTGCCCTTTGGCAGGAGGCGGCCGTGGTCGAGGCGGTAGTTCATTTTCCTCACGTCCTAGGTTTGGAGGTGCTGGTGGACATGGGGATCGCCTTAGTGAACGCGATCGATATGTTGATGACCGTTATGATGGAGGACGTTATGGAGATAGAGATCGTTTTGAGAACCGGGACTACAAATATGGTGGCCGTGATCGCTATGCTAGTGACAGGTATCCAACTAGTGGAGATCGATTTGCAAGTGATCGATATGGCAGTGGCTCAGATTACCCACAAAATGGTTATGGCAAGGAAAGAGGGTATGACAGGTATGGTGGTGCACGAGGAGGTGCTGATAGGTATGGAAGTGGAATGCCAGCTCGAGATGAAGGAAGGAGTTATAGAGGTAGGCCTGGTCCTTATGACCGCCCAAGCAGGGGTGGTCGTCCATCATCATTTGACCGCTACTGA	843	0.5101	MAGKEENRIFVGGLSWDVTERQLEHAFGRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDVDQGYRGGGYSSGGRGSYGVGDRIGQDDCFKCGRPGHWARDCPLAGGGRGRGGSSFSSRPRFGGAGGHGDRLSERDRYVDDRYDGGRYGDRDRFENRDYKYGGRDRYASDRYPTSGDRFASDRYGSGSDYPQNGYGKERGYDRYGGARGGADRYGSGMPARDEGRSYRGRPGPYDRPSRGGRPSSFDRY	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi26g00057	280	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Sebi26g00057	280	MobiDBLite	consensus disorder prediction	159	203	-	-
	Sebi26g00057	280	Gene3D	-	1	117	IPR012677	-
	Sebi26g00057	280	SUPERFAMILY	Retrovirus zinc finger-like domains	106	139	IPR036875	GO:0003676\|GO:0008270
	Sebi26g00057	280	PANTHER	SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL	4	272	-	-
	Sebi26g00057	280	SUPERFAMILY	RNA-binding domain, RBD	4	111	IPR035979	GO:0003676
	Sebi26g00057	280	SMART	c2hcfinal6	119	135	IPR001878	GO:0003676\|GO:0008270
	Sebi26g00057	280	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Sebi26g00057	280	ProSiteProfiles	Zinc finger CCHC-type profile.	120	134	IPR001878	GO:0003676\|GO:0008270
	Sebi26g00057	280	FunFam	glycine-rich RNA-binding protein RZ1C	1	115	-	-
	Sebi26g00057	280	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	78	IPR000504	GO:0003723
	Sebi26g00057	280	Pfam	Zinc knuckle	120	134	IPR001878	GO:0003676\|GO:0008270
	Sebi26g00057	280	MobiDBLite	consensus disorder prediction	136	280	-	-
	Sebi26g00057	280	Gene3D	-	118	156	-	-
	Sebi26g00057	280	MobiDBLite	consensus disorder prediction	84	103	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi26g00057	Sebi-Chr26	903146	908068	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi26g00057	9	88	C2H2 Transcription Factor Family	AT2G19380	43.750	1.42e-14	71.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi26g00057	-		-	gmx:100809519	461.455