Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi26g00008 ATGTCATTCCCTACATGGGTTCTTAAATCAGTAAAAAAATACAAAAAATTAGAGTACCAAGTTGGTACTACCACCACCACCAGCCACTCTCAATCCTCCACAACTCCACCCACCGCACCACCAGCCACTCCCAAGCCTCCACCACACCACCACCCACCGCACCACCAGCCACTCTCAAGCCTCCACCACACCACCCACCGCACCATTAGTCACTCCAAAGCCTCCCCCCACACCACCCACCGCAGAACCAACCCTATCCAAGCTTCCCACACCACCACCACCAGCCCCAACCAAGCCTACCAAAACGATGCAGATCTGAGAACCAGATCTGGGAAGCGAATAGAAAAAGAAAGAAAGAAGGGTTGGCAAATGGGGATGGGTTCCAAGATGGAAGGACCGTCTACCCCAGCAATTCGACGTGACCCATATGAGGTATTGTCCGTGTCAAGGGACTCAAACGACCAGGAAATTAAAACCGCTTACAGAAAGCTTGCTCTCAAGTATCACCCTGACAAGAATGCTAGCAATCCTGAGGCTTCAGAACTATTTAAAGAGGTTGCATATTCTTATAGTATATTGTCTGACCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATTGATTTATCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATTTCTGCTAATGTTCTCGAAGAAGCTCTGAATGGCACAGTTACAGTCAGACCCCTTCCAATCGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTTACAATAAATGAGCAGCAAGCTGAGTCAGGGATTGTCGTAAGAGTTACTTCAACTGCACAAAGCAAGTTCAAGTTGCTCTACTTTGAACAAGATGCAAATGGTGGCTATGGTTTGGCATTGCAGGAAGACAGTGAGAAGACGGGTAAGGTGACATCTGCAGGAATGTATTTCTTACATTTCCAAGTGTACAGAATGGATGCAACTGTGAATGCGTTAGCGATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAATCTCGGAACTAAAGCCTGGAACGCATATATTTGCTGTTTATGGAGATAATTTCTTTAAGACTGCTAGCTATACGATTGAGGCGGTATGTACAAAATCATATGAAGATACCACCCAAAAACTTAAGGACATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAATCTGAATACAGAAAGGCATTGGCGCGCTATCAGGAGGTGACAGACAGATACACAAAAGAAAAACAATCTGTGGACGAGCTTCTAAAACAAAGGGACAGTATCCATTCTTCCTTCACCATTGTCAAGTCAAGCAATATCAGTGGAAGTGGTAGTAATTTAAGTAATGGTAGTTCTAGCAAAATTTCTGGTGAAGATTCAAAAGCTGAGAGCCCAGGGGAAGATGGAGGATCAGATGGCAAGGATAAATCAGGCAAAAAGAAGTGGTTTAACCTGAATCTTAAGGGTTCTGATAAGAGATTGATTTAA 1614 0.4424 MSFPTWVLKSVKKYKKLEYQVGTTTTTSHSQSSTTPPTAPPATPKPPPHHHPPHHQPLSSLHHTTHRTISHSKASPHTTHRRTNPIQASHTTTTSPNQAYQNDADLRTRSGKRIEKERKKGWQMGMGSKMEGPSTPAIRRDPYEVLSVSRDSNDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDATVNALAMAKDPEGAFFKRLEGLQPCEISELKPGTHIFAVYGDNFFKTASYTIEAVCTKSYEDTTQKLKDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDSIHSSFTIVKSSNISGSGSNLSNGSSSKISGEDSKAESPGEDGGSDGKDKSGKKKWFNLNLKGSDKRLI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi26g00008 537 Pfam DnaJ domain 141 203 IPR001623 -
Sebi26g00008 537 PRINTS DnaJ domain signature 198 217 IPR001623 -
Sebi26g00008 537 PRINTS DnaJ domain signature 143 161 IPR001623 -
Sebi26g00008 537 PRINTS DnaJ domain signature 161 176 IPR001623 -
Sebi26g00008 537 PRINTS DnaJ domain signature 178 198 IPR001623 -
Sebi26g00008 537 MobiDBLite consensus disorder prediction 483 501 - -
Sebi26g00008 537 Gene3D DnaJ domain 127 223 IPR036869 -
Sebi26g00008 537 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 127 535 - -
Sebi26g00008 537 ProSitePatterns Nt-dnaJ domain signature. 183 202 IPR018253 -
Sebi26g00008 537 MobiDBLite consensus disorder prediction 483 524 - -
Sebi26g00008 537 MobiDBLite consensus disorder prediction 48 78 - -
Sebi26g00008 537 SUPERFAMILY Chaperone J-domain 140 211 IPR036869 -
Sebi26g00008 537 MobiDBLite consensus disorder prediction 22 36 - -
Sebi26g00008 537 Coils Coil 411 466 - -
Sebi26g00008 537 CDD DnaJ 141 195 IPR001623 -
Sebi26g00008 537 FunFam Chaperone protein dnaJ 16 126 223 - -
Sebi26g00008 537 MobiDBLite consensus disorder prediction 79 105 - -
Sebi26g00008 537 SMART dnaj_3 140 198 IPR001623 -
Sebi26g00008 537 MobiDBLite consensus disorder prediction 22 119 - -
Sebi26g00008 537 ProSiteProfiles dnaJ domain profile. 141 206 IPR001623 -
Sebi26g00008 537 MobiDBLite consensus disorder prediction 502 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi26g00008 Sebi-Chr26 52746 64495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi26g00008 134 213 C2H2 Transcription Factor Family AT1G74250 42.353 3.93e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi26g00008 - - gmx:100811270 729.939