LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi269g00056	ATGTGGTCTCAGATATGGATCTTTATGGTTATAGTGTATGGATCCTTTCACCTCATATGCTCAACAGTAGAATCTTCTTCAGAGGCAGATAAGATCCAAAGTTTGCCAGGCCAACCAGAAGTTAGTTTTCAACAGTTTGGAGGTTACATACATGTTGATGACAAACATCAGAGAGCTTTGTTTTACTATTTTGTTGAAGCAGAAACAAATCCTGCTTCCAAGCCTCTAATTCTCTGGCTAAATGGAGGACCCGGTTGTTCCTCTATAGGAGTTGGAGCTTTTACTGAACATGGTCCTTTTACCACTAATTTTGGCCAATCTATTACAAAGAATAAGTACAGTTGGAATAGAGAGGCCAATGTTCTGTACTTAGAATCCCCAGCTGGTGTTGGATTTTCTTATTCTACAGATAAATCATTTTTCAAAACACTCAATGATGACATTACAGCCCGGGACAATATGGTGTTTCTGCAGAGGTGGCTGGCTAAGTTCCCACAGTACAAGAATAATGAATTTTACATAATGGGGGAAAGTTATGCAGGACACTATGTACCACAACTTGCAGAACTCATTGTAAAGAGTAAAGTGAACATCAATCTAAAGGGGATAGCGATCGATGATGAATACTCTGAGTTAGATTACATTGATCTATATTATGTCATTGGTGATAAATGCCTTTCTTACAATTTATCACAAGCTGCAATTCTCACTCACCGGAGAAGGTCAAGCATATCACAAATATTTAGGACTTTAAATATGCAAAAAGATGGAAAAACTCACCAATACCACCAGGAGCTTGATAACTGTCCACTGAAAAATGCAGAGATGTACTTGAACAGAAAAGAGGTGCAGAAGGCTTTGCATGCTCGGCTTGTTGGAGTGAACAATTATCATTTATGTAGCCCGAGAGAAGATGAAGAAATACCAACAATCAACATTGTGGGCTGGCTCATAAAGTCTGGCCTTAAAGTAATTGTATACAGTGGGGATCAAGATTCTGTTGTTCCATTTATTGGTACTAGAAGATTGGTTGATAAACTAGCTAAGAGACTAGGATTGAAAACAACTGTGCCATACAGTGCTTGGTTTGTTGGAAAACAGGTTGGTGGATGGACACAAGTTTATGGAGATCATGATCTTACCTATGCAACTATTAGAGGGGCTTCACACAGCACCCCAACTACTCAACCAAAGAGATCGTTTGTATTGTTTGATTCATTTCTTCGTGGGAAACGACTCCCTAAAGCATGA	1251	0.3901	MWSQIWIFMVIVYGSFHLICSTVESSSEADKIQSLPGQPEVSFQQFGGYIHVDDKHQRALFYYFVEAETNPASKPLILWLNGGPGCSSIGVGAFTEHGPFTTNFGQSITKNKYSWNREANVLYLESPAGVGFSYSTDKSFFKTLNDDITARDNMVFLQRWLAKFPQYKNNEFYIMGESYAGHYVPQLAELIVKSKVNINLKGIAIDDEYSELDYIDLYYVIGDKCLSYNLSQAAILTHRRRSSISQIFRTLNMQKDGKTHQYHQELDNCPLKNAEMYLNRKEVQKALHARLVGVNNYHLCSPREDEEIPTINIVGWLIKSGLKVIVYSGDQDSVVPFIGTRRLVDKLAKRLGLKTTVPYSAWFVGKQVGGWTQVYGDHDLTYATIRGASHSTPTTQPKRSFVLFDSFLRGKRLPKA	416

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi269g00056	416	PRINTS	Carboxypeptidase C serine protease (S10) family signature	380	393	IPR001563	GO:0004185\|GO:0006508
	Sebi269g00056	416	PRINTS	Carboxypeptidase C serine protease (S10) family signature	160	185	IPR001563	GO:0004185\|GO:0006508
	Sebi269g00056	416	PRINTS	Carboxypeptidase C serine protease (S10) family signature	111	123	IPR001563	GO:0004185\|GO:0006508
	Sebi269g00056	416	PRINTS	Carboxypeptidase C serine protease (S10) family signature	124	134	IPR001563	GO:0004185\|GO:0006508
	Sebi269g00056	416	Gene3D	alpha/beta hydrolase	24	413	IPR029058	-
	Sebi269g00056	416	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	31	397	IPR001563	GO:0004185\|GO:0006508
	Sebi269g00056	416	FunFam	Uncharacterized protein	27	120	-	-
	Sebi269g00056	416	FunFam	Carboxypeptidase	310	410	-	-
	Sebi269g00056	416	ProSitePatterns	Serine carboxypeptidases, serine active site.	174	181	IPR018202	GO:0004185
	Sebi269g00056	416	Pfam	Serine carboxypeptidase	37	207	IPR001563	GO:0004185\|GO:0006508
	Sebi269g00056	416	Pfam	Serine carboxypeptidase	229	410	IPR001563	GO:0004185\|GO:0006508
	Sebi269g00056	416	SUPERFAMILY	alpha/beta-Hydrolases	22	414	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi269g00056	Sebi-Chr269	1165534	1169023	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi269g00056	265	413	Calmodulin-binding Proteins	AT2G22960	27.632	4.48e-13	65.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi269g00056	K16297		-	qsa:O6P43_006342	520.39