Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi269g00047 ATGATGAATTCAGGGTCGCTTGATTACTGGAGGAATTACTTTAGAGGTGCTAACGCTGATATCTTTGGTATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGTCCCAAGGAGTTCAAGTTAAGGAGGGGTTCGATTGCAGAACGCTTGTTCTCTTGCAGGTTGACTCGCTGTTCAGGGTGTGACAGAGTTGAGTTGGCTGTGTCTGCGTCTGCGGATGATGGTGGTGGTTGCAATTGCAAGAGCGGCTCTGATGGAAATGGTACTAAGCTTGAGTTTGAAGCGGGGTCAAGCAAAGAGAGCAAGGTCAATAGTTGCAGGGATGATCATGGAGAGATGAATATGAACCAAGTCAGCAATTACAGCTTTGAGGAGGCTGAGGCATTGATTGATGAGATTGAAGAAGAGTCTCAGTATTTTGAGGAGGTGTTGAGGATCAGAGATATTGTGCTTAACTTTAAAGAAGAGTCTAATTCAGAGTTATTTGAGTCATTGAGGAGGCTTCAACTGATGGAACTCACTATGGATCTCCTGAAGGCAACCGAGATTGGAAAAGCTGTTAATCCTCTTCGAAAGCATGGATCAAAGGATATTTCTCAACTTGCACGGACTCTTATCAATGTCTGGAAAGGAATGGTGGATGAGTGGGTCAAGGCTACCACACCTATTGCAGAAGGCACTCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAAGAGGGACTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAATTGCAACTCAAACTGGTTCAATGGATCTCTCAAAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCAACAAAGTGGGGAATTCATCAAGAACCAAGATGACAGAAGACCATGTGTGAACAGTCAAAATATAGCAAAGCCAAAGAGTAAACCACGGGTTTCAAATGAGGCTGCTGTGAAGCTAAATAAACCAAAAACTGCTGATTCTGGCCCTGGCAGACCACCAAAACCAACCATGCAGAAAGAAGCCAATATTGAGCCAAAGATGCAGCAAAATATATTAAAGAGTGCTGTCCCAAAAAAGCCTCATGTTGGTCAGCTAGATGTAAGAAAAAAATCTCTTGGCGCAGAACAGCCACAAATCCAGAAATTCAAGTGTTTGGATGATGCTGCACTCCAAGTAAAGTTAGAAGCCACTAAGAGGAAACTTCAGGAGCGATATCAACAAGCTGAAAATGCTAAGAAGCAGCGGACAATACAGGTTATAGAGTTGCATGACATCCCAAAGCAAGGCTCTGGTCATCGTAATACACATGTCAAACCCGGAAATCATAAGAGGCAATGGCCTCATGGACGGAAGTAG 1350 0.4363 MMNSGSLDYWRNYFRGANADIFGIIDHAIMVAASDCPKEFKLRRGSIAERLFSCRLTRCSGCDRVELAVSASADDGGGCNCKSGSDGNGTKLEFEAGSSKESKVNSCRDDHGEMNMNQVSNYSFEEAEALIDEIEEESQYFEEVLRIRDIVLNFKEESNSELFESLRRLQLMELTMDLLKATEIGKAVNPLRKHGSKDISQLARTLINVWKGMVDEWVKATTPIAEGTPDSVNPSVVDEEEGLPSPPMDEGALFAIATQTGSMDLSKFFDGMDDDGNPQQSGEFIKNQDDRRPCVNSQNIAKPKSKPRVSNEAAVKLNKPKTADSGPGRPPKPTMQKEANIEPKMQQNILKSAVPKKPHVGQLDVRKKSLGAEQPQIQKFKCLDDAALQVKLEATKRKLQERYQQAENAKKQRTIQVIELHDIPKQGSGHRNTHVKPGNHKRQWPHGRK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi269g00047 449 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 226 IPR035441 -
Sebi269g00047 449 MobiDBLite consensus disorder prediction 434 449 - -
Sebi269g00047 449 Coils Coil 124 144 - -
Sebi269g00047 449 MobiDBLite consensus disorder prediction 225 246 - -
Sebi269g00047 449 Coils Coil 389 416 - -
Sebi269g00047 449 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Sebi269g00047 449 MobiDBLite consensus disorder prediction 268 336 - -
Sebi269g00047 449 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Sebi269g00047 449 CDD TFIIS_I 142 215 - -
Sebi269g00047 449 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 226 IPR035441 -
Sebi269g00047 449 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 2 437 IPR044805 -
Sebi269g00047 449 SMART TFS2_5 141 216 IPR003617 GO:0005634
Sebi269g00047 449 MobiDBLite consensus disorder prediction 421 449 - -
Sebi269g00047 449 MobiDBLite consensus disorder prediction 291 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi269g00047 Sebi-Chr269 1044268 1047529 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sebi269g00047 Med26 7.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi269g00047 - - gmx:100775579 641.728