Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi269g00044 ATGCTAGCATTATCTCCTTCTCCTATGTTCTCTACCATTGGATATTGGCCCTATGAGGAGCCTCTAAGCCAAAGCCAGAACAACTACTTCTACAAACACACAGAGAACTCAGAACTATTTCATCATCAGCCACAGGTTGAGATCCAAAGTTCCACTCCCTCACCGGCCATAATCAGTGACCTTACAATGGTGAAGAAGCTTATTCACAATGCAAGTGAACGTGATCGCAGAAAGAAGATCAATGCTCTGTATTCCTCACTTCGTTCACTTCTTCCTGTTGCAGATCAAATGAAAAAGTTGAGCATTCCAGCAACAATTTCAAGAGTCGTAAAGTACATACCTGAGTTACAGAAGCAGGTGAATGGACTGACTAAGAAAAAGGAAGAGATTTTATTGAGAATTTCTAAGCAAGGGGATGCAGTGATCAACAAAGAAACTCAAAGGAAGATTGTCCATTCCAAATCCAACTCTGGTTTTGTAGTTTCAACAAGTAGGCTCAATGATAGTGAGGCTTCTATTCAGATATCATCTTATACTGTCCACAAAATTCCACTTTCTGAGATCTTGCTGTGTTTAGAAAATGATGGCCTTGTTCTGCTAAATGCTTCTTCTTCTGAGACATTTGGAGGGAGGACCTTCTATAACTTGCATTTCCAGGTGGATAAAACACAGAGGTTAGAATCAGAGGTTCTGTATGAGAAGCTTTTGTCAATAATTGATAAAAATGGGAACTTTCTAGTGAAATGA 747 0.3949 MLALSPSPMFSTIGYWPYEEPLSQSQNNYFYKHTENSELFHHQPQVEIQSSTPSPAIISDLTMVKKLIHNASERDRRKKINALYSSLRSLLPVADQMKKLSIPATISRVVKYIPELQKQVNGLTKKKEEILLRISKQGDAVINKETQRKIVHSKSNSGFVVSTSRLNDSEASIQISSYTVHKIPLSEILLCLENDGLVLLNASSSETFGGRTFYNLHFQVDKTQRLESEVLYEKLLSIIDKNGNFLVK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi269g00044 248 FunFam Transcription factor ORG2 60 153 - -
Sebi269g00044 248 Pfam Helix-loop-helix DNA-binding domain 66 117 IPR011598 GO:0046983
Sebi269g00044 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Sebi269g00044 248 SMART finulus 70 122 IPR011598 GO:0046983
Sebi269g00044 248 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 48 237 - -
Sebi269g00044 248 CDD bHLH_AtORG2_like 65 137 - -
Sebi269g00044 248 Gene3D - 60 149 IPR036638 GO:0046983
Sebi269g00044 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 133 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi269g00044 Sebi-Chr269 890518 891779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi269g00044 1 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 44.314 3.68e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi269g00044 HLH 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi269g00044 - - gmx:100803424 278.87