Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi269g00043 ATGTTAGCATTATCCCCTTCTCCTATGTTCTCAACCATTGGATATTGGCCCTTTGAGGAGCCTATAAGCCAAAGCCAGAACAACTACTTCTACAAAGACACTGAGGACTCATTAGAACAATTTCATCATCTGTTGTCTTCATCTCATCAAACACAGGTTGAGATCCAGAATTCCACTCCCTCACCGGCCATAAGCAGTGAGCTTAGCATGGTGAAGAAGCTTATTCACAATGCTAGTGAACGTGATCGAAGAAAGAAGATCAATGCTCTGTATTCTTCACTTCGTTCACTTCTTCCTCTGGCAGATCAAATGAAGAAGTTGAGCATTCCAGCAACAATTTCACGAGTCCTAAAGTACATACCTGAGTTACAGAAGCAGGTGGAAGGACTAACTAAGAAAAAGGAAGAGATCTTATTGAGAATTTCTAAGCAAGGGGATGCAGTCATCAGCAAAGAATCTCAAAGGAAGATTGTCCATTCCAAATCCAACTCTGGTTTTGTGGTTTCAACAAGTAGACTCAGTGATAGTGAGGCTTCTATTCAGATTTCATCTTATACTCTCCACAAGATTCCACTTTCTGAGATCTTACTGTGCTTGGAAAATGATGGCTTTGTACTGCTAAATTCTTCTTCCTCTGAGACATTTGGAGGGAGGACCTTCTATAACTTGCATTTCCAGGTGGATAAAACACAGAGGTTAGAATCCGAGGTTCTGTATGAGAAGCTTTTGTCAATAATTGATAAAAAAGGGAACTTTCTAGTGAAATGA 768 0.401 MLALSPSPMFSTIGYWPFEEPISQSQNNYFYKDTEDSLEQFHHLLSSSHQTQVEIQNSTPSPAISSELSMVKKLIHNASERDRRKKINALYSSLRSLLPLADQMKKLSIPATISRVLKYIPELQKQVEGLTKKKEEILLRISKQGDAVISKESQRKIVHSKSNSGFVVSTSRLSDSEASIQISSYTLHKIPLSEILLCLENDGFVLLNSSSSETFGGRTFYNLHFQVDKTQRLESEVLYEKLLSIIDKKGNFLVK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi269g00043 255 FunFam Transcription factor ORG2 67 160 - -
Sebi269g00043 255 Pfam Helix-loop-helix DNA-binding domain 73 124 IPR011598 GO:0046983
Sebi269g00043 255 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 60 244 - -
Sebi269g00043 255 SMART finulus 77 129 IPR011598 GO:0046983
Sebi269g00043 255 Gene3D - 65 155 IPR036638 GO:0046983
Sebi269g00043 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 140 IPR036638 GO:0046983
Sebi269g00043 255 Coils Coil 120 140 - -
Sebi269g00043 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Sebi269g00043 255 CDD bHLH_AtORG2_like 72 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi269g00043 Sebi-Chr269 880774 882160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi269g00043 1 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.462 9.30e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi269g00043 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi269g00043 - - vvi:100262373 276.944