Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi268g00055 ATGGATCCTTTATGTGAGTTATGTGGGGTTGTAAGAGCTGTCGTTTACTGCAAGCCTGATTCTGCTCGTCTCTGTTTGGATTGCGATGTATGTGTGCACGCTGCTAATGCTTTATCTTGTAGGCATCCTCGTTATCCCCTGTGTGGCAAGTGTAATTGCCAACCAGCAATTGTCCACTGCTTGGACAATAAATTGTCTTTATGTCAATGTTGTGACTGGGACCAACATAACTGTTTGTTGTTGGGACACAAGCATCAAACTTTGAATTGCTATACGGGTTGTCCCTCTTTTACTGAGTTTCCGATGTTATTGTCCTATGTGCTTGATGCTACTTCCTCAGATGGCTCAGATCATGGTGGGGGATCACTTAATACATTGCAAAAAAATGATAGTTGCATTAGCAAGTGTTTGGAGCAGCTCGAAAATGGTAGCTCATTTGATTTGGTGAGTAACAAGTTGAATGAAAAAGAACCATGTGCCAAATATGAACCATGGATGGAGCAAGCTTCCACTATTCCATCAAATCCAAATTACAAGAACATATCAAAGGAACATTCAAATGTTAATGATCTACTAATGCATGATGAAGATGATCTCAGCATGGAGAGTATTCTAATTAACTTTGAAAATAGTGCTGAAATGTTTGATTGTTCTCAAATTGCCACAAAAAACCACTTTGATAATGGAGGAATGGGTTGTGAGTTAAAGGAAAACAACATATCAATTTCAGAATCTAATACTCTCATTAAGAGTGTCATGGAGGAATCATCACCAATCCATCATGACTATGAGGCATTTCAGTCATTCAGGACTAGTGACTCAACTAGTGTAATGTTGGGACTCAATGGTAACACAAATTGTGTACTTATGCATCCATGCTTCAATGACAACATCAACAAAGGATTTCCTCAAGGCCAAGACTATTCAAGCATATCTCTTTCATTACCAAAAATCAATGGTGAAATTAATGGCACTGATTATCAAGATAGTGAATTACCACCAATGTTTATGGTAGGAGAATCCCCATGGGAATCAAATTTGGAGGGTACATGCCCACAAGCCAGGGAGAAGGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAAGGTTTGGTAAGCAAATAAGGTATGCATCTCGCAAAGCAAGGGCCGATACAAGAAAACGCGTGAAAGGTAGATTTGTGAAAGTAAATGATGCAAGTGATTGTGATCCTCAAGGGGCAGGGGACTTCTAA 1236 0.3916 MDPLCELCGVVRAVVYCKPDSARLCLDCDVCVHAANALSCRHPRYPLCGKCNCQPAIVHCLDNKLSLCQCCDWDQHNCLLLGHKHQTLNCYTGCPSFTEFPMLLSYVLDATSSDGSDHGGGSLNTLQKNDSCISKCLEQLENGSSFDLVSNKLNEKEPCAKYEPWMEQASTIPSNPNYKNISKEHSNVNDLLMHDEDDLSMESILINFENSAEMFDCSQIATKNHFDNGGMGCELKENNISISESNTLIKSVMEESSPIHHDYEAFQSFRTSDSTSVMLGLNGNTNCVLMHPCFNDNINKGFPQGQDYSSISLSLPKINGEINGTDYQDSELPPMFMVGESPWESNLEGTCPQAREKAKMRYNEKKKTRRFGKQIRYASRKARADTRKRVKGRFVKVNDASDCDPQGAGDF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi268g00055 411 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sebi268g00055 411 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Sebi268g00055 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 400 - -
Sebi268g00055 411 CDD Bbox1_BBX-like 4 47 - -
Sebi268g00055 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi268g00055 411 Pfam CCT motif 355 397 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi268g00055 Sebi-Chr268 1040132 1041846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi268g00055 1 405 C2C2-CO-like Transcription Factor Family AT3G21880 36.058 1.63e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi268g00055 CCT 7.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi268g00055 - - gmx:100804738 473.011