Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi268g00031 ATGTCTGTGGGAACGGATGACTCTCAAGCCATCCACAACATTGTCAATGATGTTTTGCAAAAGCTATACTTCTTGAACCCTAATGAACTAAAAGGCATTGTTGGGATTGATGAAACCATACAGCACCTTGAATTATCACTGAAAAGCGTTCGAGCAATTGGAATCTGGGGTATGGGTGGTAAAGGTTTGTTTGCCAAACTCTTTCCTCAATATGACAGTGTCTGCTTCATGCCAAATATAAGTGAAGAATCGAAAAGGATAGGACTAACATCTTTACGTAATAAGCTTTTCTCTGAGCTGCTGAAGGAAGAAATTCCCCTGTTTGATGTTGTAGGATCCACGGTCATTATGAGGAGGCTTGGAAGTAAAAGGGTTTTACTTGTACTCGATGATGTAGATAGTTTTGAGCAGTTAGAATGTTTGTGTGGAGAACGCGGTGATCTTGGAGAAGATATTACACTGATTGTAACAACAAGAGATAAGCACTTGCTTAGTGGAAGAGTTGATGAGATATATGAGGTCAACCAAAGGAGCTTTGAAGAATCTCGAGAGCTTTTTTGCTTACATGCCTTCAAGACAAGGCATCCCCAAGAAGGATATGAGGGACTCTCAAACAGGGCAATCCATTATGCAAAGGGCATTCCATTAGCTTTAAAAGTTTTGGGTTCACATCTCTACTCCAGAAATCGTGAATTTTGGAAAAGTACACTGAGAAAACTTGACAAGTATCCCAATGAGAAAATTTTGAACGTGTTAAAAGTTAGTTATGATGGATTAGACAGTCTAGAAAAGAAAATATTTCTAGACATTGCATTCTTTTTCAAAGATAAAGATAAACATCAGGCTGTATGGATACTAGATGCCTGTGGTTTTTTTGCAGTTAGTGGATTAGACATCCTTATAGATAAATCTCTGGTAACTATTTCACATAACAACACCATACAAATGCATGATTTATTACAAGAAATGGGTTGGGATATAGTTCGTAAAGAATGCTGGGGAAACCCTGGAAGACGTAGCCGATTGAGGGCTAATGAAGCTTATGATGTACTTAATAATAACAAGGGCACTGATGTAGTTGAAGTAATAACATTAGATTTGTCTCAAATAGTAGATTTACAATTGAGTGCTGACACATTCAACAGGATGCCTAATTTAAGATTTCTTCAATTATATGTCCCCGGGGGCAAGAGATCAGGTACTTTGTACCACTGTAGAGTTCTTGAGGCATTTTCTGATGAATTGAGGTATTTTGAGTGGGATGGATTCCCTTTATCATCTCTTCCACCAAATTTTTGTGCTCAGCATCTTGTTGTGATTCGTATGCCACATAGCCATGTTAAAGAACTTTGGCAGGGGGTGCAGGATCTTGTGAATTTAGAGGCAATTGACCTACGCGAATGCAAACAGTTGGTAAAGCTTCCAGATTTGTCTAGGGCGTCAAAGCTTGTATTGGTGAATCTCTATGGTTGTGAAAGCTTGTCTGATGTTGATCCATCTGTTTTGTCTCTCGAAGCACTTGAATCTCTGATACTGGATAACTGCATAAAATTGAAGAGTCTAACAAGAAGTAGAGTTCCAACGCACTTGGCACATCGAACCAAAGAGTCCTCCATTACCATTGAACTTCCTTCCCAACGTGCTGACCTTTTAGGCCTCGTCTACTCTGTGGTTCTTAACCCTCCTCCAACAATGGAGCAAGGTGCTAAAATCCATTGTCAATGCCGCTTGGTGGACGGTACAAAGGTGGGAAACGAGATTACATGGCATCAAGAAGCCATCTGGGGATTGGATTCGGATCATGTATTTATATGGTACGATTCATTCCATTCTGATAGAATTCTCCATTATTATAACCGACTTCGTTTTGAGTTCTTTGTTACAACAAAAAATGGGGAACTGATCAGTATCCAAGAGTGTGGGGTCCACCTAATGCGTGTCTCACGGTCAGAGTTCTACAAATTCTTGAGAGAAACTAGAATGAACGTGGACTTGAAGTTGAAGTTTGGATTGATGTTAGACACAAAAGTCTAG 2034 0.3958 MSVGTDDSQAIHNIVNDVLQKLYFLNPNELKGIVGIDETIQHLELSLKSVRAIGIWGMGGKGLFAKLFPQYDSVCFMPNISEESKRIGLTSLRNKLFSELLKEEIPLFDVVGSTVIMRRLGSKRVLLVLDDVDSFEQLECLCGERGDLGEDITLIVTTRDKHLLSGRVDEIYEVNQRSFEESRELFCLHAFKTRHPQEGYEGLSNRAIHYAKGIPLALKVLGSHLYSRNREFWKSTLRKLDKYPNEKILNVLKVSYDGLDSLEKKIFLDIAFFFKDKDKHQAVWILDACGFFAVSGLDILIDKSLVTISHNNTIQMHDLLQEMGWDIVRKECWGNPGRRSRLRANEAYDVLNNNKGTDVVEVITLDLSQIVDLQLSADTFNRMPNLRFLQLYVPGGKRSGTLYHCRVLEAFSDELRYFEWDGFPLSSLPPNFCAQHLVVIRMPHSHVKELWQGVQDLVNLEAIDLRECKQLVKLPDLSRASKLVLVNLYGCESLSDVDPSVLSLEALESLILDNCIKLKSLTRSRVPTHLAHRTKESSITIELPSQRADLLGLVYSVVLNPPPTMEQGAKIHCQCRLVDGTKVGNEITWHQEAIWGLDSDHVFIWYDSFHSDRILHYYNRLRFEFFVTTKNGELISIQECGVHLMRVSRSEFYKFLRETRMNVDLKLKFGLMLDTKV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi268g00031 677 Gene3D Ribonuclease Inhibitor 350 540 IPR032675 -
Sebi268g00031 677 SUPERFAMILY "Winged helix" DNA-binding domain 247 332 IPR036390 -
Sebi268g00031 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 270 IPR027417 -
Sebi268g00031 677 Pfam NB-ARC domain 53 249 IPR002182 GO:0043531
Sebi268g00031 677 SUPERFAMILY L domain-like 361 522 - -
Sebi268g00031 677 Gene3D - 178 260 IPR042197 -
Sebi268g00031 677 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 532 IPR044974 GO:0006952
Sebi268g00031 677 Pfam Leucine Rich Repeat 436 455 IPR011713 -
Sebi268g00031 677 PRINTS Disease resistance protein signature 455 471 - -
Sebi268g00031 677 PRINTS Disease resistance protein signature 119 133 - -
Sebi268g00031 677 PRINTS Disease resistance protein signature 211 225 - -
Sebi268g00031 677 PRINTS Disease resistance protein signature 52 67 - -
Sebi268g00031 677 Gene3D - 20 171 IPR027417 -
Sebi268g00031 677 FunFam Disease resistance protein (TIR-NBS-LRR class) 178 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi268g00031 Sebi-Chr268 557762 561259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi268g00031 50 544 WRKY Transcription Factor Family AT5G45050 32.319 2.11e-65 233