Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi268g00009 ATGAAGAATGGTGAGGGAAACTGGAACTCGGTGCAGAAGAATTCGGGGTTGGGAAGGTGTGGAAAAAGTTGCAGGTTGAGATGGGTTAACCATTTAAGGCCTAACTTAAGTAAAGGTCCATTTTCAAACGAGGAAGAGAAAATCATCATTCTTCTTCATGCTAAACAAGGAAACAAATGGGCTCAAATGGCCGCACAGTTACCTGGGAGGACAGACAATGAAATAAAAAACTTTTGGAATACCAGAATGAAAAGGTGCCAAAGAGCAGGGTTGCCTCTTTATCCTCCAGAAGTCCTAAATGAAGCCAACACATTCCATATACAGGAGAAGGAGTACTTTACACAACTCCAATCTTCCCCATCCTTATCGTTTTCTCCATTCCTATCTTCAAATCCCCAACAAAAGGAACTCAATTCCAATTCTTCTTACTACACCAATCCATACCCTCAGTTCAATTTTCCCAATATGAAGAGTGGATATTCTGAAAACATGGTTTTCCCATCATCCTCTGTTTCTTCACATGGGCATCCTTTGTTTAACCAGTGTTTTGCCGCAAACGAGTCAAGTGATTATCACTCTGGGAGCTTCAATCATGGTTTTGAATTTGATACCAGTACTGCCATGGCAGGATCCCCATATGAATCTTTTCCTCTGGTGCAATGCTCAAACACTGAAGCTTGTTCGAGCCAATCAGCACCTGGATCCACCACCCCTGCTTCATCCAACGCTAGTGGTGTTTATGGCTTGATGGGAGGTTCAAGCATGGCTAATGGCTATCATGAAGGTGAATCATTATCACCTCATAGAAACAGTGGCCTTTTGGATGCTCTAGTGATGGAGGCTCAAAGCCTTTCTCGCAATGATAACAAGTCAAAGAGTGAGTGTGAGGATTCAACTACAGCAGAAGGAGAGTTATCTTGTAAGAGGAAAAGCATGATAGCTAAGGAATATGATGAAGAGGATGAACAAGTGCTTGTGGAGACAACTATGGAGAACAGTGACAACAATACTAATAAGAAACAGAGGATTGATAAAGGGAAGAAACCAATTGTTGAGGAGGAGTCATTGGAGGGGATGGATTACGTGGATGATGACTTATTTAGTATGCTCAACAACTTTCCCTTAGAAATGTCAGTGCCTGGATGGTACCGTGGTGGAGAAAGACAATCATTGGGACTTGAAACTCAACAAGATCCTTCATCTTCATCTGGCCTTAGTGATGAGGAATTGGCTTGGACTCTTGGTACTTTTTGGAGCAATATGCCTAACATGTGCTAA 1278 0.4218 MKNGEGNWNSVQKNSGLGRCGKSCRLRWVNHLRPNLSKGPFSNEEEKIIILLHAKQGNKWAQMAAQLPGRTDNEIKNFWNTRMKRCQRAGLPLYPPEVLNEANTFHIQEKEYFTQLQSSPSLSFSPFLSSNPQQKELNSNSSYYTNPYPQFNFPNMKSGYSENMVFPSSSVSSHGHPLFNQCFAANESSDYHSGSFNHGFEFDTSTAMAGSPYESFPLVQCSNTEACSSQSAPGSTTPASSNASGVYGLMGGSSMANGYHEGESLSPHRNSGLLDALVMEAQSLSRNDNKSKSECEDSTTAEGELSCKRKSMIAKEYDEEDEQVLVETTMENSDNNTNKKQRIDKGKKPIVEEESLEGMDYVDDDLFSMLNNFPLEMSVPGWYRGGERQSLGLETQQDPSSSSGLSDEELAWTLGTFWSNMPNMC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi268g00009 425 Gene3D - 1 37 - -
Sebi268g00009 425 CDD SANT 40 81 IPR001005 -
Sebi268g00009 425 CDD SANT 2 32 IPR001005 -
Sebi268g00009 425 Gene3D - 40 86 - -
Sebi268g00009 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 32 IPR017930 -
Sebi268g00009 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Sebi268g00009 425 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 2 395 - -
Sebi268g00009 425 ProSiteProfiles Myb-like domain profile. 1 32 IPR001005 -
Sebi268g00009 425 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
Sebi268g00009 425 Pfam Myb-like DNA-binding domain 38 81 IPR001005 -
Sebi268g00009 425 SUPERFAMILY Homeodomain-like 18 87 IPR009057 -
Sebi268g00009 425 SMART sant 37 85 IPR001005 -
Sebi268g00009 425 SMART sant 1 34 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi268g00009 Sebi-Chr268 146376 148673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi268g00009 2 98 MYB Transcription Factor Family AT2G32460 82.474 8.54e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi268g00009 Myb_DNA-binding 1.9e-12 CL0123