Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi266g00025 ATGGCTCTCGAAGCTCTCAACTCACCCACCACCACTGCCCCATCCTTCCCCTTTGACGAACCAAGCCTCCGATACCCAGAGCCATGGGCAAAACGAAAGCGTTCCAAGCGTCCTCGTTTGGACCACCCTTCATGCACCGAGGAAGAGTATCTCGCTATCTGCCTCATCATGCTCGCTCGCGGCGGCACCACCACCGATTCCAACCGCCAAGGCTCTATTGATTCCCGAACCACTCCTCCACCTGAGTCAAAGCCACAACTGGCAACCGATCCAGCCGGTTCCGTCAAGCTAAGTTACAAATGTTCTGTGTGCAACAAGGCTTTCCCATCTTACCAAGCACTCGGTGGACACAAGGCCAGTCACCGGAAACTCTCTGCCGTCGGTGAAGATCAATCCACCTCCTCAGCCGCCACCACCAGTTCTGCTAACACCGCCGCCGCTTCCATCGGGGGAGTCAGGACTCACGAGTGTTCCATCTGCCATAAATGTTTCCCCACCGGACAGGCCTTGGGTGGACACAAACGCTGCCACTACGAAGGTGGTGGTGGTGGTAGCAGCAGCGCTGTCACCGCCTCTGAAGGTGTTGGCTCCACCCACACCGTCAGCCATAGCCACCGCGATTTCGATCTCAACATCCCTGCTTTTCCAGAGTTTTCTACCAAGGTGGGAGAAGACGAGGTTGAGAGTCCTCACCCTGTGATGAAGATGAAGAAGCCCCGTGTTTTCGTCATACCCAAGATCGAAATCCCTCAGCTCCAGTGA 762 0.5604 MALEALNSPTTTAPSFPFDEPSLRYPEPWAKRKRSKRPRLDHPSCTEEEYLAICLIMLARGGTTTDSNRQGSIDSRTTPPPESKPQLATDPAGSVKLSYKCSVCNKAFPSYQALGGHKASHRKLSAVGEDQSTSSAATTSSANTAAASIGGVRTHECSICHKCFPTGQALGGHKRCHYEGGGGGSSSAVTASEGVGSTHTVSHSHRDFDLNIPAFPEFSTKVGEDEVESPHPVMKMKKPRVFVIPKIEIPQLQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi266g00025 253 MobiDBLite consensus disorder prediction 1 42 - -
Sebi266g00025 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 177 IPR013087 -
Sebi266g00025 253 MobiDBLite consensus disorder prediction 1 17 - -
Sebi266g00025 253 Pfam C2H2-type zinc finger 99 123 - -
Sebi266g00025 253 Pfam C2H2-type zinc finger 155 178 - -
Sebi266g00025 253 SMART c2h2final6 155 177 IPR013087 -
Sebi266g00025 253 SMART c2h2final6 99 121 IPR013087 -
Sebi266g00025 253 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 216 IPR044653 GO:0003700
Sebi266g00025 253 MobiDBLite consensus disorder prediction 185 199 - -
Sebi266g00025 253 MobiDBLite consensus disorder prediction 126 143 - -
Sebi266g00025 253 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Sebi266g00025 253 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Sebi266g00025 253 MobiDBLite consensus disorder prediction 124 143 - -
Sebi266g00025 253 SUPERFAMILY beta-beta-alpha zinc fingers 99 177 IPR036236 -
Sebi266g00025 253 MobiDBLite consensus disorder prediction 181 203 - -
Sebi266g00025 253 Gene3D Classic Zinc Finger 97 177 - -
Sebi266g00025 253 MobiDBLite consensus disorder prediction 64 91 - -
Sebi266g00025 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Sebi266g00025 253 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi266g00025 Sebi-Chr266 686987 687748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi266g00025 1 249 C2H2 Transcription Factor Family AT1G27730 52.713 1.41e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi266g00025 zf-C2H2_6 3.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi266g00025 - - gmx:547886 332.798