Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi264g00040 ATGGCATTCTGTAGTAAGGTTGGAAACCTCTTGAGGCAGAGTGCTCCTCAGAGCAGACAAGTACCTGTTGCATCCATGCTTAATTACATTCGCTGCATGTCTTCATCCAAGCTTTTCATCGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAGGGATGCGTTTGCAAGCTTTGGAGATGTGGTTGAGGCAAGGGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCACTGATGAGTCAGCAAGTTCAGCACTATCTGCCATGGATGGACAGGTTGGAGTGTTTGACAGCTTTTCTGTTTGTATTTAA 336 0.4494 MAFCSKVGNLLRQSAPQSRQVPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLRDAFASFGDVVEARVITDRDTGRSRGFGFVNFSTDESASSALSAMDGQVGVFDSFSVCI 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi264g00040 111 PANTHER GEO13361P1-RELATED 23 104 - -
Sebi264g00040 111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 100 IPR000504 GO:0003723
Sebi264g00040 111 SUPERFAMILY RNA-binding domain, RBD 13 100 IPR035979 GO:0003676
Sebi264g00040 111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 111 IPR000504 GO:0003723
Sebi264g00040 111 CDD RRM2_NsCP33_like 37 100 - -
Sebi264g00040 111 Gene3D - 9 105 IPR012677 -
Sebi264g00040 111 SMART rrm1_1 37 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi264g00040 Sebi-Chr264 1202159 1203038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi264g00040 9 94 C2H2 Transcription Factor Family AT2G19380 32.558 4.67e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi264g00040 - - qsa:O6P43_023573 178.333