Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi262g00032 ATGCCCCCTGACCTGCAAGAACTTCTTGAAGCTTTGCAGGATTTCACTGCTCAGACTGGCGATCCAACTGGAACTGGGACCGGTGGTGATTCCATCTACAAGTTTCTATATGGTGATCAAGCTCGGTTTTTCAGCGATGAAATTCATATTGATCTGAAGCATTCTAAGACTGGAACAGTTGCCATGGCAAGTGCGGGAGAGAATTTGAATGCTTCACAGTTTTATATCACTCTGCGTGATGATCTCGATTACCTCGATGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTCGAATAAATGAGGCTTATGTGGATGAGAAGGGTAGACCATATAAAAATATCCGAATCAAACACACATACATCCTGGAGGACCCTTATGATGATCCTTCTCAGTTAGCTGAGTTCATTCCTGAAGCCTCACCAGAAGGAAAACCTAAAGATGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTGCCAATGGATGAACAATTAAACCCAGCAGAGCTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTCGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCCGAGATTAAGCCTCCAGATAATGTACTATTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGTTATGCTTTCATAGAGTTTGAGGACAAACAGGCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGACGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAATACAGGCGGAGAGATCACAAGGGTAAAGGTGGTGGTTGCTTCAAATGCGGTTCTACGGATCACATTGCCAAGGATTGCACTGGAGATGCTACAATGAAACAGCAACCTGCAAAATACATTTTGAAGGACGATAATGCCCAACGTGGTGGAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACACAGAAAGTCCAAGGCGAGATATAAAACACCAAAGGCGTGACAGGGATGACCTAGTTGATAAAAAAGGTAGGAAGGAAAATTTTAAAGATCATATTCATAGAGGTCATAGGGATCAGGAGATGGTAGGCTCGAACAACAGAGATAGGCATGGTGATAGAGGCAGAGGGCACGATGGAAATGGAGATGATAAAACACGATCTGAAAGAGGTGTGAGAGATACAAGAGATTTGGATTCCCATGCTGACAAGAAAGACAGAGAAAAGCATATGGGAAGACATAGAGATGATGACTACAGACGAAAAGATGAGCTAGACTCTAGAAAAAGAGACATGGATGATAACTACATAGAAAGGCGGAGTAGTCGAGATGATAGGAGAAAAGCTGATACTAGCCATTTGGAGAGAAGGAATGAGAGAGATTATAGGAGAACTGAAGACAGTGGAAGGCAAGATGCGAAGATTGATTCCAGACGAAGAAAACGAAGCCCCGATGATAAAGACTACAGACATAGAAGGGAGGATGAAGATTATAAACATAGAAGGGAGGATGATAAAGATTACAAACATAGAAGGGAGGATGAAGATTACAAACATAGAAGGGAAGAACGTGGACATAGAAGACAAGATACTGAATCCGATGACTATCCTCGTAGAAGGCATCACAGTGACAGGAGATGA 1749 0.4208 MPPDLQELLEALQDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLAEFIPEASPEGKPKDEVDDDVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRRDHKGKGGGCFKCGSTDHIAKDCTGDATMKQQPAKYILKDDNAQRGGDNARYEMVFDGDNTESPRRDIKHQRRDRDDLVDKKGRKENFKDHIHRGHRDQEMVGSNNRDRHGDRGRGHDGNGDDKTRSERGVRDTRDLDSHADKKDREKHMGRHRDDDYRRKDELDSRKRDMDDNYIERRSSRDDRRKADTSHLERRNERDYRRTEDSGRQDAKIDSRRRKRSPDDKDYRHRREDEDYKHRREDDKDYKHRREDEDYKHRREERGHRRQDTESDDYPRRRHHSDRR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi262g00032 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Sebi262g00032 582 SUPERFAMILY Cyclophilin-like 12 138 IPR029000 -
Sebi262g00032 582 SUPERFAMILY Retrovirus zinc finger-like domains 295 326 IPR036875 GO:0003676|GO:0008270
Sebi262g00032 582 Pfam Zinc knuckle 306 321 IPR001878 GO:0003676|GO:0008270
Sebi262g00032 582 SUPERFAMILY RNA-binding domain, RBD 195 305 IPR035979 GO:0003676
Sebi262g00032 582 FunFam 26S proteasome regulatory complex ATPase 42 138 - -
Sebi262g00032 582 SMART c2hcfinal6 306 322 IPR001878 GO:0003676|GO:0008270
Sebi262g00032 582 CDD RRM_PPIL4 206 288 - -
Sebi262g00032 582 ProSiteProfiles Zinc finger CCHC-type profile. 307 320 IPR001878 GO:0003676|GO:0008270
Sebi262g00032 582 SMART rrm1_1 210 283 IPR000504 GO:0003723
Sebi262g00032 582 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 125 IPR002130 GO:0000413|GO:0003755
Sebi262g00032 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 281 IPR000504 GO:0003723
Sebi262g00032 582 MobiDBLite consensus disorder prediction 355 582 - -
Sebi262g00032 582 FunFam Peptidyl-prolyl cis-trans isomerase 148 289 - -
Sebi262g00032 582 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 58 73 IPR002130 GO:0000413|GO:0003755
Sebi262g00032 582 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 87 102 IPR002130 GO:0000413|GO:0003755
Sebi262g00032 582 Gene3D - 8 139 IPR029000 -
Sebi262g00032 582 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 127 IPR002130 GO:0000413|GO:0003755
Sebi262g00032 582 Gene3D - 194 351 IPR012677 -
Sebi262g00032 582 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 13 480 IPR035542 -
Sebi262g00032 582 MobiDBLite consensus disorder prediction 351 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi262g00032 Sebi-Chr262 1263350 1269842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi262g00032 11 132 U-box Gene Family AT5G67530 40.164 3.60e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi262g00032 K12735 - gmx:100776900 909.442