Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi261g00086 ATGGAAGCCACATTTCCCAAGATGGAAATCTTCACCCAAAAGGAATTGGCAACTTGTTTGCAAGAAATGGCAACAGGATCAAAGTTTTTGGACAGTACAATTATAAGAGGTTCTCACCCATTCACTGCTTCTCATCATGTTCATGTATTAAGAAGTGAGGTAAACTCATCAATAGTATCACCTGAAAAGCTTTTTTCATATTCAAATTCTACTCCAATGAAAGAAGAGGTGCCTTTAGCTGCCTTGAATAGTCACATCCAAGCAAAGTTCAATGATCATGAAGACATGGAGAAAGGGAAAGCAAAAAACCAATCCGTTTCTAGATTCAATTCTATCTCCACTCCTGGTGTCCCAGCCTCCTCAGATATAAAACATAGCTCTATTCCTCTAAATCTTCTGGAAACTCTCCCATCATTAACCATAGCACCAGTTTCTGATGAGCCAGCTGCTTCTTTATCCTCTTCTTCTGCCACACCCAAATTTCCAAACCTGACTTTGTTTTTGCAGGAACCCTCCATGCTGTACACATCATCCTCACATATGAAAAGTAGTGAAGTCATGTCAGCAACTTCAGACCCCACATACCATGTGTCCCAATTTGGCCAAACCCAGCATCAAACAGGTAGTGATTCACACAGAATGAATAAGAATCTGACAAATCTGCGGTACAAGTCTTTCAATGACAATTGGTTGAGTACCACTAAGACTCAGCCTTTGAAGTATAGTGGAAGAGGCAAGCTGTTTAAAGGGGTGAGGCAGAGACATTGGGGGAAATGGGTTGCTGAGATTAGGTTACCAAGAAACAGGACAAGGGTTTGGTTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTAAGAGGAGAATATGCTCAGTTGAACTTTCCAGATCTAAGCATGAAGCCTGCTGATTCACCAGCAGGGTCAAACAATAAGCACATCACTGATGAGAATGGCAAATTGAAAAGCAAAAATGGCAAGGATTCAACCATCAAGGAATGGCAGTTTGATATAGAGAGCAGGGTTGGACTTGGAGGTGACACAATTGAGAGAAGCAAAAATACAAATCATGAGATATCAGATGTGGAAGGTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATGAACTTTTAGTCTCTGATTCATGA 1188 0.4116 MEATFPKMEIFTQKELATCLQEMATGSKFLDSTIIRGSHPFTASHHVHVLRSEVNSSIVSPEKLFSYSNSTPMKEEVPLAALNSHIQAKFNDHEDMEKGKAKNQSVSRFNSISTPGVPASSDIKHSSIPLNLLETLPSLTIAPVSDEPAASLSSSSATPKFPNLTLFLQEPSMLYTSSSHMKSSEVMSATSDPTYHVSQFGQTQHQTGSDSHRMNKNLTNLRYKSFNDNWLSTTKTQPLKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLSMKPADSPAGSNNKHITDENGKLKSKNGKDSTIKEWQFDIESRVGLGGDTIERSKNTNHEISDVEGVQLSRMPSLDMDIIWDELLVSDS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi261g00086 395 Pfam AP2 domain 248 296 IPR001471 GO:0003700|GO:0006355
Sebi261g00086 395 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Sebi261g00086 395 Gene3D AP2/ERF domain 247 305 IPR036955 GO:0003700|GO:0006355
Sebi261g00086 395 MobiDBLite consensus disorder prediction 98 120 - -
Sebi261g00086 395 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 95 390 - -
Sebi261g00086 395 SUPERFAMILY DNA-binding domain 247 305 IPR016177 GO:0003677
Sebi261g00086 395 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Sebi261g00086 395 PRINTS Ethylene responsive element binding protein signature 270 286 IPR001471 GO:0003700|GO:0006355
Sebi261g00086 395 MobiDBLite consensus disorder prediction 311 334 - -
Sebi261g00086 395 FunFam Ethylene-responsive transcription factor 2 246 305 - -
Sebi261g00086 395 MobiDBLite consensus disorder prediction 103 120 - -
Sebi261g00086 395 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Sebi261g00086 395 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi261g00086 Sebi-Chr261 1206768 1208047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi261g00086 126 390 AP2-EREBP Transcription Factor Family AT4G13620 43.772 7.36e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi261g00086 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi261g00086 - - gmx:100820013 513.842