Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi261g00083 ATGCAAACTTGGAGTTGGAACAATCACTCCACCGTACTTGATTTCAATCCTTGTAACTATGCGTTTACGGTTGGAGAGGGATATTACAATTTCTCTTCAATGGATCTTAAGAAACTTGAAAAGGAGAGTGTGCCTTTGGTGCTTGATTGGGCAGTGGGAAATCAAAGGTGTAAAGAAGCTCAATATCTTAGTAGATATGCATGCAAGGCTAAGAATAGTGTTTGCCACGATTCCACCAATGGAATTGGGTATATTTGCAAATGCAAAGATGGTTTCATGGGAAACCCTTACCTCCATCATGGCTGCCAAGATGTCAATGAATGCAATAGGAAGCCTAGCCCCTGCAGCAGAATATGCAGAAACGTTGCTGGGACGTATAAGTGTTTGTGCCCAAAGGGATATGAGGGAGATGGGTTGAGAGATGGCGAAGGATGCCGGCCCAAAGACAAATCCATGGGGAATCTCATACTTATAATTGGACTGAGTTTGAGCTTAAGTCTTTTGGCAGTAATTGTGGGATGCATAAACATATATCCCCAAATACGTGAAAGAAAGCTCATCAAAATGAGAGAAAATTATTTTCAACAAAATGGTGGCATATTGTTACAACAACAAATTGATTCACATAATGGGTCAGCTGAAAGAGCCACAATCTTCACAGCTGAAGAGCTCAAGGAAGCTACCAACAATTATGATGAGGAAAGAATCATAGGTAAAGGTGGTCATGGAACAGTGTATAAAGGTGTATTATCAAATGGCAGAGTTGTAGCCATTAAGAAGTCCATGGTTTCTAACCAGACAGAGATTGAACAATTCATCAATGAAGTGGTTGTACTTTCCCAAATCAACCACAGGAATGTTGTAAAGTTGCTAGGTTGTTGTTTAGAGACAGAGGTTCCTCTGCTTGTTTATGAATTTATCACTAATGGAACCCTTTGTGATCATCTACATGTTGAAGCTGAACATCAAGCATGTAAACTTTCATGGACAACTCGTTTAAGAATTGCAGCAGAGACAGCAGAAGCTCTTGCATATTTGCATTCTGCTGCTTCTACACCAATCATACATAGAGATGTCAAAACTGCAAATATACTTCTAGATGAAAATCTCACAACAAAAGTTTCTGATTTTGGGGCTTCAAAGCTTGTTCCTCTTGATCAAACTCAATTGACCACTTTGGTGCAAGGAACATTGGGTTACCTTGATCCTGAATACTTTCAATCAAGTCAGCTAACAGAGAAGAGTGATGTTTATAGCTTTGGGGTTGTTTTGGCAGAACTGCTAACAAGCAAGAAGGCACTTTCATTTCTTAGGCCTGAGATTCATAGAAATCTTTCTATGTATTTTGTTTCTTCAATGAATGAGGGTGGATTGCATCAAATCTTAGATAATGAAATAGTGAGTGATGCAAATGTTGAGCATATAATAGAAGTTGCTAATCTAGCAAAAAGGTGTCTTAGGCTAAAGGGAGAAGAAAGACCAAGCATGAAAGAAGTGGCATTGGAGTTGGAGGGAATAAGGACTGTTGAAAAACATTCATTAGGAAAAGCTAATGTATATGAAGAAGAGACTGAGTACTTTCTCAAAGTAAGTTCACCCCTTTACATCATGGACAATGGAGAAGGTAGTGGTGGTAGCAGTACAATTACTAGGTTTTATAATTTGCAAAACCAGATTTTGGAACCACTAGGTGATGGACGATAA 1704 0.3891 MQTWSWNNHSTVLDFNPCNYAFTVGEGYYNFSSMDLKKLEKESVPLVLDWAVGNQRCKEAQYLSRYACKAKNSVCHDSTNGIGYICKCKDGFMGNPYLHHGCQDVNECNRKPSPCSRICRNVAGTYKCLCPKGYEGDGLRDGEGCRPKDKSMGNLILIIGLSLSLSLLAVIVGCINIYPQIRERKLIKMRENYFQQNGGILLQQQIDSHNGSAERATIFTAEELKEATNNYDEERIIGKGGHGTVYKGVLSNGRVVAIKKSMVSNQTEIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLCDHLHVEAEHQACKLSWTTRLRIAAETAEALAYLHSAASTPIIHRDVKTANILLDENLTTKVSDFGASKLVPLDQTQLTTLVQGTLGYLDPEYFQSSQLTEKSDVYSFGVVLAELLTSKKALSFLRPEIHRNLSMYFVSSMNEGGLHQILDNEIVSDANVEHIIEVANLAKRCLRLKGEERPSMKEVALELEGIRTVEKHSLGKANVYEEETEYFLKVSSPLYIMDNGEGSGGSSTITRFYNLQNQILEPLGDGR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi261g00083 567 Gene3D Phosphorylase Kinase; domain 1 197 306 - -
Sebi261g00083 567 SUPERFAMILY Growth factor receptor domain 55 138 IPR009030 -
Sebi261g00083 567 Gene3D Laminin 55 145 - -
Sebi261g00083 567 Gene3D Transferase(Phosphotransferase) domain 1 307 527 - -
Sebi261g00083 567 SMART egfca_6 104 146 IPR001881 GO:0005509
Sebi261g00083 567 Pfam Protein kinase domain 231 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi261g00083 567 ProSiteProfiles EGF-like domain profile. 104 137 IPR000742 -
Sebi261g00083 567 FunFam Fibrillin 2 99 141 - -
Sebi261g00083 567 FunFam Wall-associated receptor kinase 2 201 306 - -
Sebi261g00083 567 CDD EGF_CA 104 137 - -
Sebi261g00083 567 ProSitePatterns Calcium-binding EGF-like domain signature. 104 128 IPR018097 GO:0005509
Sebi261g00083 567 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 510 IPR045274 GO:0007166
Sebi261g00083 567 Pfam Calcium-binding EGF domain 104 135 IPR001881 GO:0005509
Sebi261g00083 567 CDD STKc_IRAK 237 506 - -
Sebi261g00083 567 SMART egf_5 107 146 IPR000742 -
Sebi261g00083 567 SMART egf_5 56 103 IPR000742 -
Sebi261g00083 567 SMART serkin_6 231 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi261g00083 567 SUPERFAMILY Protein kinase-like (PK-like) 215 503 IPR011009 -
Sebi261g00083 567 ProSiteProfiles Protein kinase domain profile. 231 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi261g00083 567 ProSitePatterns Protein kinases ATP-binding region signature. 237 260 IPR017441 GO:0005524
Sebi261g00083 567 FunFam Wall-associated receptor kinase 2 307 526 - -
Sebi261g00083 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Sebi261g00083 567 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 119 130 IPR000152 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi261g00083 Sebi-Chr261 1179206 1182155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi261g00083 2 530 Receptor kinase-like Gene Family AT1G21230 52.239 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi261g00083 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi261g00083 - - vun:114190859 807.749