Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi261g00071 ATGGCAGGAAACTTCAGATTCATGATGGATCAAAAGGATATTGTTAGATTCTTGACTACAACTGTTGATAGTTTCATTCAAGATCGATTAATCAACAAAGAACAAAGAACCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTGTGACAAAGACACTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAATATGGAAACTAAGCTTGCCAGACTAGATTATGCTGAGAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTCCTACCTCTCAGCTTGGGCACACCTAAACCTATCCTACTTATGGAAGTTGAGGAACAACATTCAAAATTGTATTTTTCATGTTCTTGAGATGTTCATTGTTGATCCTTTCTTCTCTCGTATTGATTTTGCTCCTGAACTCTGGAAAAACCTGTTTCTTCTACACATGAGCTCAATTGTTGGGTGGTATTCAGAAGAGAGGCACAGGCTTATGATGGAAGTGATACCTGACTCTTCTGATTTGTCCTTTACAGCTGATTTTGATCAATTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCACACCAATTAGAAAAGTTGCAAAAGCTGGAGCAGCTATATGGAGAGTCATTGGATGAGAACACAAGGCTATATGCAAAATACTATAATGATTGCATGAACTCTGATTCCACCTCAAGCAAGAAGGTAGCTCCTATGTTGCCAATTGCCGAGCCTCCAATGACTCCTTTGCATGAGTTGAGCCGGTCTATTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGATTTTCTTTGGCACCAAGATCTAAAGATGGTTTAAATGAAACAATGAGAGAGAATTTAACTTCCAGCCATTCGAAGCAGGAGAAACCATCCCTATGGGGTGCTAAGGAGAGCATCATTGAAGAAAATGAAGATGATTCAGATTCTGAGCTTGAGGATGCATCTGTGGATTCTGATAACAAAAACAATGTTTTCTCACCTGAAATGAAGATTATCAAGGATGAGGACATTGTGCCAAAAGTGAATCTATCAAACCAGAAGAATCAAATACATTCTCCTGAAATCTTTTCTCCCTTGGGTTCCCCAAGAACTGCTACAAATAATGCATCTACAAATTCTGATATACGAAGTAAAAGAGAATCTAAGTTCTTGCGCTTAATGTCTAGTCGTGTCAGGCACTCAAGTATTTCTGACTCTTTATCATCATCTCCTGACATGAGCACAGAGCACACTGTCAACTCTGATAACGAAGTGATGGTTTTGAAGAATATTCAGAGGAAAAACAATAACCAAACACCAAGTATGAATCATGATAATGAGAATAGCCTGGTACTAAATGACAGTTCCCTTTGTGAAAGTGATGATGGATATCAAAGCTTCACTTCATTGCCAAAACTAGAGAAGCTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGTTCAGAACAGGAAACACAACATGCCCCATTACACGACAGCCTTTATCTGCAAGCACATTACCCAAAACAAACTATGTTTTGAAGAGATTGATTACATCATGGAAAGAACAGAATCCTGAACTAGCTCAAGAATTCTCCAATGCTAACACACCAAGGGGTTCTTCCTGTTCTCCCTCCGCAAAAGACATCCCAATGCTCTCCACTATGCAAAGATCAACTGATATACCAAGTCATAAGAATAAAGAAGATTATGTCAGACAAAGGAGCAACAGATTTATGCGGGTTGCTGTCACAACATCTCCAACTAGTGTTCTATCTCAAGCTGCAGTTGAAACAATCATGAATTCCTTGAAACCTTACATTTCAAGTCTCTGCACATCAGAAAACTTGCAAGAATGCGAAGAAGCTGTGTTGGAAATAGCAAGATTGTGGAAGGATTCAAAGACTGATCCTCAGATTCATTCTTTCTTATCAAAGCCAACTATCATAAGTGGTTTAGTAGAAATTCTTTCAGCTTCTCTGAATAGAGAAGTTCTGAGAACATCAATTTATATTCTTTCCGAGCTAATTTTTGCAGATGAAAGTGTTGGAGAAACACTTAACAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGCTGAGGCTGCTATTCTTATTTACCAACTACGACCAGTTTTCGCTCAGCTTTCATCACATGAACTTATACCATCTCTTGTCCAGGTGATCCAGAACAAAAACGAGGAGTTAGATGATTTTCAGTTTGCTACAGACCCCAAAGATGCTGCAATAGCAGTTCTTGAGCAAATTTTGATGGGAGGGGATGAACATAACCGGTCTCTTAATGCTATGAGTGTTATTTCAGCAAATGGGATTCCAGCCTTGGTGAAGTATTTGGAGAGAATGGAAGGAAGGAGGTCTGTTGTTGCCACACTTTTGTGTTGTATGCAAGCTGAAAAGAGTTGCAAGAGCTTGATAGCAAACAGAATTGAATTGTCTCCTGTTCTCGAATTATTTCACTCTGGAAACGATAGTGTAAGAGGCATCTGTGTGGAGTTTCTCTCAGAACTGGTTCAATTGAATAGAAGGACGTTCTGTAACCAGATATTACAGACAATCAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATACCTTCAGATGGCTCCAATGGAGCATCAAATTGCTGTTTCCAGTCTTCTTCTTCAGCTTGATCTTCTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTAATAGAAGCACTCTGGCAAAAGGACTTCTCAAATACTCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACATGTCACTTCCTCCGGAAAGTCATATACTGAAGCTTGGTTGCTCAAGATTGCAGGATTTGATCAACCTTACAATGCTATAATGAAGGCTGAGCAGTTGGGACAGTATGACAACGATTTGATGGAAACAATGGAGGATGAAAAGAATGCTATGAACTCTTGGCAGAAAAGAGTAGCTTTTGTGCTATGCAATCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACTTGGCTCACACACATGCTCTCTACTCTTCCGGATACCGGTGTAAGGGATGTTGCTCGCAAATCCTTGCTTGATGAACTTATAAATGTCCTTCAGTCATCCAAGAACCTGGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGACATTCATTAGTGATCCAGTTGCCCACGAAGCATTTAGAGTTTATGCTAAAAGCATTTATAGAACCTTGAGGAAGCTGAAGAAATATTCACTGGTGGCTGTTGATATTATGAAAGTCATACTAAACTTACAATCTGTTGATGTGACAGAATTGTGGAGCTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTTCTTTCTTTGCTTTATCTGAATGGTCAGGTCTTCAGCGGGCACTCTGATGGATCTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACTTCTCTTTGTTCTTCAGTTGATAGACTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGACGATTAAACCTGATGGGATTAAATGTATAGATGTTTATGACATTAAGGAAGCAGTATATGAGCTGACAGCCGATGCTAAATTGGCATGCTATGTATCTCAAGGAACTGGAGTTTTTAATTGGTCAGAGGCTCCGAAGCACATCAATTTCAACAAATATGTGAAATGTCTTGCTGTTACTGGGGACAAACTGTATTGTGGATGCTCTGGTTACAGCATTCAGGAGGTTGACTTGTCCAAATATACATCAAATCCATTCTTCTCTGGTACAAGAAAATTGTTGGGAAAACAAACCATTCACTCCCTTCAAATTCATGATGATTACCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACTGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGATCACTCTCAACTGGACTTGACATCCATCGCATAGCCATCAACAGTGACTTCGTATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTAAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATTACATCATTAGTATCAGATGCAGATGGTATGATGCTCTTTGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4455 0.3962 MAGNFRFMMDQKDIVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSCDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQNCIFHVLEMFIVDPFFSRIDFAPELWKNLFLLHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLVFSMRPHQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNSDSTSSKKVAPMLPIAEPPMTPLHELSRSIPDFVKFGPILPKSAGFSLAPRSKDGLNETMRENLTSSHSKQEKPSLWGAKESIIEENEDDSDSELEDASVDSDNKNNVFSPEMKIIKDEDIVPKVNLSNQKNQIHSPEIFSPLGSPRTATNNASTNSDIRSKRESKFLRLMSSRVRHSSISDSLSSSPDMSTEHTVNSDNEVMVLKNIQRKNNNQTPSMNHDNENSLVLNDSSLCESDDGYQSFTSLPKLEKLTIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWFRTGNTTCPITRQPLSASTLPKTNYVLKRLITSWKEQNPELAQEFSNANTPRGSSCSPSAKDIPMLSTMQRSTDIPSHKNKEDYVRQRSNRFMRVAVTTSPTSVLSQAAVETIMNSLKPYISSLCTSENLQECEEAVLEIARLWKDSKTDPQIHSFLSKPTIISGLVEILSASLNREVLRTSIYILSELIFADESVGETLNSVDSDFDCLATLLKNGLAEAAILIYQLRPVFAQLSSHELIPSLVQVIQNKNEELDDFQFATDPKDAAIAVLEQILMGGDEHNRSLNAMSVISANGIPALVKYLERMEGRRSVVATLLCCMQAEKSCKSLIANRIELSPVLELFHSGNDSVRGICVEFLSELVQLNRRTFCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQIAVSSLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHVTSSGKSYTEAWLLKIAGFDQPYNAIMKAEQLGQYDNDLMETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLATWLTHMLSTLPDTGVRDVARKSLLDELINVLQSSKNLEEKILATLALKTFISDPVAHEAFRVYAKSIYRTLRKLKKYSLVAVDIMKVILNLQSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVFSGHSDGSIKVWDARKRIPRVIQETHEHTKAVTSLCSSVDRLYSGSLDKTIRVWTIKPDGIKCIDVYDIKEAVYELTADAKLACYVSQGTGVFNWSEAPKHINFNKYVKCLAVTGDKLYCGCSGYSIQEVDLSKYTSNPFFSGTRKLLGKQTIHSLQIHDDYLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFVFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi261g00071 1484 Gene3D - 651 1182 IPR011989 -
Sebi261g00071 1484 Pfam WD domain, G-beta repeat 1246 1274 IPR001680 GO:0005515
Sebi261g00071 1484 Pfam WD domain, G-beta repeat 1452 1481 IPR001680 GO:0005515
Sebi261g00071 1484 MobiDBLite consensus disorder prediction 388 412 - -
Sebi261g00071 1484 Pfam U-box domain 512 582 IPR003613 GO:0004842|GO:0016567
Sebi261g00071 1484 Gene3D - 1183 1484 IPR015943 GO:0005515
Sebi261g00071 1484 MobiDBLite consensus disorder prediction 388 410 - -
Sebi261g00071 1484 SMART WD40_4 1441 1482 IPR001680 GO:0005515
Sebi261g00071 1484 SMART WD40_4 1195 1233 IPR001680 GO:0005515
Sebi261g00071 1484 SMART WD40_4 1238 1275 IPR001680 GO:0005515
Sebi261g00071 1484 SUPERFAMILY ARM repeat 623 1153 IPR016024 -
Sebi261g00071 1484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1450 1484 - -
Sebi261g00071 1484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 593 IPR013083 -
Sebi261g00071 1484 MobiDBLite consensus disorder prediction 338 363 - -
Sebi261g00071 1484 ProSiteProfiles Trp-Asp (WD) repeats profile. 1245 1277 IPR001680 GO:0005515
Sebi261g00071 1484 Coils Coil 1114 1134 - -
Sebi261g00071 1484 SMART Ubox_2 514 578 IPR003613 GO:0004842|GO:0016567
Sebi261g00071 1484 SUPERFAMILY RING/U-box 510 583 - -
Sebi261g00071 1484 ProSiteProfiles Trp-Asp (WD) repeats profile. 1450 1484 IPR001680 GO:0005515
Sebi261g00071 1484 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1483 - -
Sebi261g00071 1484 SUPERFAMILY WD40 repeat-like 1218 1483 IPR036322 GO:0005515
Sebi261g00071 1484 CDD RING-Ubox_PUB 512 564 IPR045210 -
Sebi261g00071 1484 ProSiteProfiles U-box domain profile. 510 585 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi261g00071 Sebi-Chr261 941392 948408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi261g00071 501 903 U-box Gene Family AT1G23030 25.537 1.66e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi261g00071 - - gmx:100776142 2573.12