Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi261g00055 ATGGGGTATCTCTTGTTGCTTTCATGCTTTTCTACCTTGTTATATGCTGCTTCTGCCTTGAGTTCTGATGGGTTGACACTGTTGTCACTCTTAAGGCACTGGACTGTTGTTCCTAGTGACATAAACTCAACATGGAAGGCCTCTGATTCCACTCCATGCTCATGGGCAGGAGTGGGTTGTGATCATGCCCATAATGTAATATCTCTAGAGCTCACTAACTATTCGATTTTTGGTCAATTAGGACCTGAAATTGGAGATTTGATTCACTTGCAAACCTTAGACTTGTCAGATAATGATCTCTCAGGAAAAATTCCACCACAATTAAGCAATTGTAGCATGCTTGAGTCCTTGGAGCTTTATGCAAACAACTTTAGTGGAGAAATACCTGAGAGCTTCAAGGACTTGCAAAATCTGAACCGCATGGACCTTTCTTCTAATCTACTGATTGGTGAAATTCCTGAATCCTTGTTGGAAATTCCTCTCCTGGAAGTGTTGTTTCTTAACAACAACAGTTTAAGTGGTGGCATTCCTGCAAGTATAGGGAACATCACTAAGCTTGTCTCACTGGATCTTCGGAGTAATCGATTGTCTGGGACAATTCCCATTTCCATTGGAAACTGTAGTGAATTAAGCTATCTTTATTTGGACTCAAATAAATTGCAGGGAGTTATTCCTGAGAGTCTAAACAATCTAAAAAATCTTCAAGTATTAAGCCTCAATATGAATGAGCTTGGAGGTACCATCAAGTTGGGATCTGGAAATTGCAAGAAGTTATCTTATGTGAGTCTGTCTTACAATGAATTTAGTGGGGGCATTCCACCATCTTTGGGGAATTGCAGTGGTCTAACTGAGTTTTATGCTGCAGCGAATAACTTAGTTGGCAGTATACCATCAACCTTGGGTCTGCTGCACAAGCTTTCTACTCTAATAATTCCAGTGAACCATTTTTCTGGGAAAATACCTCCACAAATTGGTAATTGCAAGTCATTGGATAAGTTACATTTGTATTCCAACGCACTTGAGGGAGAAATTCCTAGTGAATTGGGAAACTTGACTAAATTACGTGATCTTAGATTGTTTGAAAACCATCTGATAGGGGAAATTCCACTTAGCATATGGAAAATCCAAGGCCTTGAGCATGTCCTTGTGTACAATAACAGCCTTTCAGGAGAGCTACCTTTAGAGATGACAGAGCTCAAACATCTCAAGAATATCTCATTGTTTAACAACCAGTTCTCTGGAGTCATACCTCAAAGCTTAGGAATTAATAGCAGTTTGGTGCAGTTGGACTTTATGTTTAATAAGTTCAATGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGCAATTAGTCAAGCTGAATATGGGTGGCAATCAATTTCATGGTAGCATACCTCCTGATGTAGGAAGATGTACAACTCTTACAAGGGTAAGACTTGAAGACAATAATTTTACTGGTCCTCTTCCTGACTTTGAAATCCATCCAAATGTCTTGTACATGAGTGTCAGCAACAATAAAATCAGTGGAGCAATTCCATCAAGTTTGGGAAACTGCACAAATCTCTCCTTTTTAGATTTGTCCATGAACAACTTTACAGGTATTGTACCCTCAGAGCTAGGAAACCTTGTGAATCTCCAGACTTTGGATCTTTCTCACAATAACTTGGAAGGTCCTTTGCCACATCAGCTGTCAAACTGTACCAAAATGAACAGGTTTAATGTGGGATTCAATTTCCTGAATGGTACATTTCCATCAAGTTTGCAGAGCTGGACTACATTAACCACTTTAATTCTCAGAGAGAATCATTTTAGTGGGGGAATCCCAGCTTTCTTGTCAGAATTTCAAGCGCTTATTGAGTTAGACCTTGGTGGAAATATGTTTGGAGGGACAATTCCCAGATCAATTGGAAAATTGCAGAATTTGTTATATGGGTTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCTGGGGAGATTGGAAACCTGAAGAGTTTGCTAAGTCTGGATCTATCTTGGAACAATTTGACAGGAAGCATACAAGTTCTTCATGAGCTCAGTTCATTATCTGAACTCAACATTTCATACAATTCTTTTGAAGGTCCTGTACCACAACAGCTGATGACATTACCAAATTCTTTATCATTTTTGGGCAATCCTGGCCTATGTGTCAGTTTTTCATTGTCACATGGCTTGAATTTCACTCAAAGCAGCTATTTAAAGCCATGTGACACAAAATCAAAAGACTCAAAAAGCCTCAGTAAAGTTGCAATTGTGATGATAGCACTTGGATCCTCAATATTTGCTGTTCTTCTGGTGGGACTAATTTATATATCTTTTGTCAGAAAAACTAAGCAGGAAGCAATAATCACTGAGAAAGATGATTCTTCAGATCTTCTCAGTAAAGTGATGGAATCTACAGAAAACCTAAATGATAAATATATCATTGGCAGAGGAGCTCAAGGAGTTGTTTATAAAGCTGTAATAGGTCCAGACATTTTGGCTGTGAAGAAGCTTGTATTTGCTCAGAATGAAGGGAAAAACTTAAGCATGATCACAGAAATTCAAACCCTTGGAAAGATCAGGCATAGAAATTTGGTCAAATTGGAAAACTGCTGGTTGAGAGAAAACTATGGTCTAATCTCATACAGATACATGCCAAATGGAAGCCTTGATGATGCTTTGCATGAGAGGAATCCACCACAATCCATAGAATGGAATGTCCGCAATAAGATAGCTATTGGAATTGCTCATGGATTGGCTTATCTTCATTATGACTGTGATCCTGTCATAGTGCACCGAGACATCAAAACAAGCAACATACTTCTAGATTCTGAAATGGAGCCTCATATTTCAGATTTTGGTGTTGCTAAGCTTTTGGATCAGGCTTCTACCTCAACACAGTCATTATTTGTTACTGGTACAATTGGTTATATTGCACCAGAGAATGCTTATACAAGAGCTAAGGGTAAGGAGTCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGCCATTAGATCCATCATTTATGGAAGGAACAGATATAGTTAATTGGGTTAGTTCTGTCTGGGAGGAAACAGAAGCTATTGATGAAATTGTTGATTCAGAGCTTGCTGATGAAATTTCAAATTCAGATGTAAGGAAACAAGTAACCAAGGTGCTTTTGGTGGCATTGAGATGTACAGAAAGGGATCCACGTAAGAGACTCACAATGAGAGATGTTATCAAGCATTTGTAG 3258 0.388 MGYLLLLSCFSTLLYAASALSSDGLTLLSLLRHWTVVPSDINSTWKASDSTPCSWAGVGCDHAHNVISLELTNYSIFGQLGPEIGDLIHLQTLDLSDNDLSGKIPPQLSNCSMLESLELYANNFSGEIPESFKDLQNLNRMDLSSNLLIGEIPESLLEIPLLEVLFLNNNSLSGGIPASIGNITKLVSLDLRSNRLSGTIPISIGNCSELSYLYLDSNKLQGVIPESLNNLKNLQVLSLNMNELGGTIKLGSGNCKKLSYVSLSYNEFSGGIPPSLGNCSGLTEFYAAANNLVGSIPSTLGLLHKLSTLIIPVNHFSGKIPPQIGNCKSLDKLHLYSNALEGEIPSELGNLTKLRDLRLFENHLIGEIPLSIWKIQGLEHVLVYNNSLSGELPLEMTELKHLKNISLFNNQFSGVIPQSLGINSSLVQLDFMFNKFNGTLPPNLCFGKQLVKLNMGGNQFHGSIPPDVGRCTTLTRVRLEDNNFTGPLPDFEIHPNVLYMSVSNNKISGAIPSSLGNCTNLSFLDLSMNNFTGIVPSELGNLVNLQTLDLSHNNLEGPLPHQLSNCTKMNRFNVGFNFLNGTFPSSLQSWTTLTTLILRENHFSGGIPAFLSEFQALIELDLGGNMFGGTIPRSIGKLQNLLYGLNLSANGLIGELPGEIGNLKSLLSLDLSWNNLTGSIQVLHELSSLSELNISYNSFEGPVPQQLMTLPNSLSFLGNPGLCVSFSLSHGLNFTQSSYLKPCDTKSKDSKSLSKVAIVMIALGSSIFAVLLVGLIYISFVRKTKQEAIITEKDDSSDLLSKVMESTENLNDKYIIGRGAQGVVYKAVIGPDILAVKKLVFAQNEGKNLSMITEIQTLGKIRHRNLVKLENCWLRENYGLISYRYMPNGSLDDALHERNPPQSIEWNVRNKIAIGIAHGLAYLHYDCDPVIVHRDIKTSNILLDSEMEPHISDFGVAKLLDQASTSTQSLFVTGTIGYIAPENAYTRAKGKESDVYSYGVVLLELISRKKPLDPSFMEGTDIVNWVSSVWEETEAIDEIVDSELADEISNSDVRKQVTKVLLVALRCTERDPRKRLTMRDVIKHL 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi261g00055 1085 Pfam Leucine rich repeat 499 555 IPR001611 GO:0005515
Sebi261g00055 1085 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Sebi261g00055 1085 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 179 304 - -
Sebi261g00055 1085 Pfam Protein kinase domain 813 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi261g00055 1085 ProSitePatterns Serine/Threonine protein kinases active-site signature. 931 943 IPR008271 GO:0004672|GO:0006468
Sebi261g00055 1085 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Sebi261g00055 1085 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 305 392 - -
Sebi261g00055 1085 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 424 1085 - -
Sebi261g00055 1085 SUPERFAMILY RNI-like 93 446 - -
Sebi261g00055 1085 Gene3D Ribonuclease Inhibitor 179 306 IPR032675 -
Sebi261g00055 1085 FunFam Serine/threonine-protein kinase-like protein CCR4 886 1085 - -
Sebi261g00055 1085 SUPERFAMILY RNI-like 416 712 - -
Sebi261g00055 1085 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Sebi261g00055 1085 SMART LRR_typ_2 542 566 IPR003591 -
Sebi261g00055 1085 SMART LRR_typ_2 663 690 IPR003591 -
Sebi261g00055 1085 SMART LRR_typ_2 183 207 IPR003591 -
Sebi261g00055 1085 SMART LRR_typ_2 135 159 IPR003591 -
Sebi261g00055 1085 SMART LRR_typ_2 231 255 IPR003591 -
Sebi261g00055 1085 SMART LRR_typ_2 614 638 IPR003591 -
Sebi261g00055 1085 SMART LRR_typ_2 87 111 IPR003591 -
Sebi261g00055 1085 SMART LRR_typ_2 518 541 IPR003591 -
Sebi261g00055 1085 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 776 885 - -
Sebi261g00055 1085 Gene3D Ribonuclease Inhibitor 21 178 IPR032675 -
Sebi261g00055 1085 ProSiteProfiles Leucine-rich repeat profile. 89 112 IPR001611 GO:0005515
Sebi261g00055 1085 Pfam Leucine Rich Repeat 89 111 IPR001611 GO:0005515
Sebi261g00055 1085 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 407 731 - -
Sebi261g00055 1085 PRINTS Leucine-rich repeat signature 542 555 - -
Sebi261g00055 1085 PRINTS Leucine-rich repeat signature 90 103 - -
Sebi261g00055 1085 SMART serkin_6 810 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi261g00055 1085 Gene3D Phosphorylase Kinase; domain 1 783 885 - -
Sebi261g00055 1085 ProSiteProfiles Protein kinase domain profile. 810 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi261g00055 1085 SUPERFAMILY Protein kinase-like (PK-like) 801 1085 IPR011009 -
Sebi261g00055 1085 Gene3D Ribonuclease Inhibitor 425 730 IPR032675 -
Sebi261g00055 1085 Gene3D Ribonuclease Inhibitor 307 424 IPR032675 -
Sebi261g00055 1085 Gene3D Transferase(Phosphotransferase) domain 1 886 1085 - -
Sebi261g00055 1085 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi261g00055 Sebi-Chr261 819804 823163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi261g00055 11 1085 Receptor kinase-like Gene Family AT1G73080 51.463 0.0 1026
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi261g00055 Pkinase 6.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi261g00055 - - gmx:100817655 1634