Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi261g00024 ATGACAGATTTTCAGCCGCTACAGCAGAAGCCTGAACCTGCTGATGCACACGCCGAGTTTGAGCGTGGACTGGAGGAGTTTATGCGTGGCCACTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCTTCCCGCGCACCCGAGGATGAAGATGATGAGGGTGATCAGCTGGTTCGGAGGAGACGGCGGTCTGATCTTGAAGGGGATGATTTAGCAGAGTCATCAGCTGCGCGGAGGCGCCATTCACGGATTTTGAGCAGATGGGCTGCCCGGCAAGCGCAGGAGATGATAACTACCATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCACTTGCAGGATTACATACTGTATCCATGTTGGACTCCTCTTTTCTGAGGGGATCACAGTCTCCGACTTCTGGCCAGGAGGGAGCTGTGGAGAGACCAAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATTTATTGAATCGAGCACGTGAAAGGATGAGGGAAAGGTTGCGGCAGCAAAGGACCTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCGCATGATCAGATTGGATCACGGAATGCTCATGGGAATCACAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTAAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGTAGAGCAGAATGGCTCGGAGAAACTGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGGTCACGTGGGAGCCGGAGGGATGCTCCAGTAAGTGAATCTGCTCAAGTTGATCGAGCCCGTGATGCAGTAACTGATCACGATGAGGGTCAGCCAGAGCATGTTCGGCGTGACTTGTTGAGGTTGCGTGGAAGGCAGGCTCTAGTTGATTTGCTTGTGAGAATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCTCCGTCTATGGCTGCAAATGAATTAGTTCAGTTAAGACAACGACACACGGTCTCTGGTTTGAGGGAGGGGTTTCGTTCAAGATTAGAAACTATTGTCCGTGGTCAAGCAGGCACCAATCCTGATGCCACTTCAAATAGTAACATTAATGAAACAAGAAGCAACGAGAACCAAGCAAACAATCAGATAGATGGCCAGCAAGAAAATTATGAACAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCAAACAGGAACTGTGGAGAGTAGCACAAGTGAGACTATTAATTGGCAAGATGCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGATGGGGGAGGAAACTGGCAACAGAGAACTTATGGCCCATTCAATCAGCTAAGAGATGTAAGGGAAGTCAGTGATTGGCCACAGGAAACTCCCAGAAATTTAGCTGGGGAAGATCCTCATCCACGGGAAGTTCAAAGAGTTTGGCATGAGGATAGCACGAGGGAAGCTGTTGGTAATTGGTCTGAAGGATCATCTGGAGCTTCAAGAAATCGCCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCACCTGACGATGATAATGTATACAGCATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTACTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCTTATGTGGAAAGGCAAGGTCGTGCACCACTTGACTGGGATTTACATCGGAACTTGCCAACACCAACTCCTGCCTCACCTGAACGCGACCCTGATCAGCAGGGTGATGAACGTAATGAGGGTCAACATGAAGCAATTAACAGACCTTCACTGGTCTTGCCTTCTCCACCAGTACCTCCGCCACAACCACTGTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGTCATAGCATGCACCGATCTGAAATCGAGTGGGAGATAATGAATGACTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGAATGCTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGTTCTGTCAGGCAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACTTCTGATGATGGGTCTAAGTGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATTGATTCACTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCCAATGAGTTAGTTCGTGGCGGGGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2559 0.4795 MTDFQPLQQKPEPADAHAEFERGLEEFMRGHLDDCMSFASCSSSRAPEDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRQQRTSDSNTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQIGSRNAHGNHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAPVSESAQVDRARDAVTDHDEGQPEHVRRDLLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAANELVQLRQRHTVSGLREGFRSRLETIVRGQAGTNPDATSNSNINETRSNENQANNQIDGQQENYEQQQIRSLETDVRQLPNQTGTVESSTSETINWQDASNQGGNWQEQIAEDGGGNWQQRTYGPFNQLRDVREVSDWPQETPRNLAGEDPHPREVQRVWHEDSTREAVGNWSEGSSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPLDWDLHRNLPTPTPASPERDPDQQGDERNEGQHEAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi261g00024 852 MobiDBLite consensus disorder prediction 653 682 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 569 591 - -
Sebi261g00024 852 Coils Coil 729 749 - -
Sebi261g00024 852 Coils Coil 450 477 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 40 78 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 1 22 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 434 462 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 297 334 - -
Sebi261g00024 852 CDD mRING-HC-C3HC5_NEU1 797 849 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 433 462 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 125 146 - -
Sebi261g00024 852 SUPERFAMILY RING/U-box 799 845 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 313 334 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 173 244 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 52 78 - -
Sebi261g00024 852 ProSiteProfiles Zinc finger RING-type profile. 800 839 IPR001841 -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 483 508 - -
Sebi261g00024 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 850 IPR013083 -
Sebi261g00024 852 Pfam Zinc finger, C3HC4 type (RING finger) 797 844 - -
Sebi261g00024 852 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 852 - -
Sebi261g00024 852 MobiDBLite consensus disorder prediction 179 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi261g00024 Sebi-Chr261 408936 414316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi261g00024 782 846 C3H Transcription Factor Family AT3G06140 37.879 1.28e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi261g00024 - - gmx:100805607 1507.66