Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi261g00021 ATGCATTTGTGTGCCTCACTCATCAAACAGATGGAAGCCACCCAACAATCTGAGCGAAAGAATATGAACAAGAGCCTTGCTTTTGCTAGTGCCAGCCATGATCTTCGTACTTCTCTTGCAGGCCTCACTGGTTTGATTGAATTGTCCTATAAATTAGTTAAGGCAGGTTCAAGATTAGAGACTAATTTAAAACAAATGGAGGATTGTACCCATGACTTACTAGGACTATTGAACTCTATACTTGACACAAGCAAAATTGAGTCAGGGAAAATGCAACTTGAGGAAGAAGAATTTGATGTGTCCTATCTCCTGGAAGGTGTAGTTGATTTCTACCATCCAGAGGCCATGAAGAAAGGTGTAGATCTTGTATTGGACCCTTGTAATGGTTCTGTTATCAAATACTCACGTGTGAAAGGTGACAGGGGAAAGCTTAAACAAGTTTTGTGTAATTTACTGAACAATGCTGTCAAATTTACTAGTGAAGGGAACATAACAGTTCGGGCATGGGCTCAGAAGCCAACATTACAGAGCTCAATAATCAAGACTAACCAATATAGTTTCATGAAATGTTTATCATGCTTACTTTATAAGAAAAATGAAGCACATGATGATCTAGAAAAAGCCATGAATTCAATCCAACAAGACCCAAATTCTATGGATTTTATATTTGAAGTGGATGATACAGGAAAAGGAATTCCCAAAGAGAATTACAAGTCTGTGTTTGAGAATTATGTTCAAGTCAAAGAATCTGCTCTTGGACAAGGAGGAACCGGCTTAGGACTTGGGATTGTGCAGTCTTTGGTGCGTTTGATGCATGGAGATATTGGAATTGTGGACAAGGATATTGGCAAAAAAGGAACATGTTTCAGGTTCAATGTGCTCCTCACATTATGTGAGAGTGAGACAGTGACAGAATGTAGCACAAGGGAATGTCTTGACTATGGATCAGGTGATGACAGGAACCAAACTCAGGGGAGAGTTAATATTCACACTACTAGTTCTGGTTCAAGCATTTGTTCCATGAGTCCAAGGTTACATATTTGCAGCTCTAGTCCTAGACCTGAGGCTTCCCATGTTGTTCTTTTGATTGGAAACAAGGAGAGGAGAAGAACTTCTCAAAGGTTCATGGAAAGCTTAGGGATCAAAGTTAAAGCTGTGAAGTCTTGGAAACATCTCTTTTATACTCTTGAGAAGTTCAGACTGAAGGGTCACTATTCTGGTAGCCACAGTTCTTCAGAGTCTTCCAATATGAGTTCTCATAATTATTCTTTTGCTAAAGCCAGAGGAGTTCCTTTGAGTGCTATGGATGGAAATGGAATTGAGTATATACCACCTTCAGTGTTAAAGAAGACAGATATTGGAGCTGCCCCAGGATTGTATCCAAATTCAAGAAAAGCCTTGCCAACCCTTTCCCCTAAGATGATATTGGACAGATCACAAGTATCCCCAAGTGATGAAACCCCATGTGGAGGAGACTCAAGCTGTCACAAACCCTTAAGAGGCAAGAAGTTTTTGGTTGTTGAGGACTCTCAAATTTTAAGAAGGATAGCTTTGGCTAAATTGATTCAACTTGGTGCAATTGTTGAGCAATGTGAGAATGGTAAACAGGCTGTGCAGCTTGTTGACAAGGGTCTAATCAGGGATTATCCTAATCCTCCTTATGATTACATCTTAATGGACTGCAAGTCGGCTGGCCTTCCAGCCTTCCTAAATCCTAAATGGCTGGAAGGCCAACCGATCAGGAAGGCTAGTCGACCAGGAAGGACAAAAGACCGAGAAGGCCAGCCGACCTGGAAGATGCCAGAGATGGATGGGTTTGAGGCAACAAGGCGGATACGAGAGATTGAGAAGGCCCACAAAAATGGAGTCCGTATTCCTATCATTGCATTAACTGCTGACGAAATGATGACAGTGACTGCAATGGACTTTCATATAGTAAAGCCCATTGACACAGAGAAATTACTTAGAGCCATCAAATGCATACACACGGAAAGGATTTGA 2001 0.4108 MHLCASLIKQMEATQQSERKNMNKSLAFASASHDLRTSLAGLTGLIELSYKLVKAGSRLETNLKQMEDCTHDLLGLLNSILDTSKIESGKMQLEEEEFDVSYLLEGVVDFYHPEAMKKGVDLVLDPCNGSVIKYSRVKGDRGKLKQVLCNLLNNAVKFTSEGNITVRAWAQKPTLQSSIIKTNQYSFMKCLSCLLYKKNEAHDDLEKAMNSIQQDPNSMDFIFEVDDTGKGIPKENYKSVFENYVQVKESALGQGGTGLGLGIVQSLVRLMHGDIGIVDKDIGKKGTCFRFNVLLTLCESETVTECSTRECLDYGSGDDRNQTQGRVNIHTTSSGSSICSMSPRLHICSSSPRPEASHVVLLIGNKERRRTSQRFMESLGIKVKAVKSWKHLFYTLEKFRLKGHYSGSHSSSESSNMSSHNYSFAKARGVPLSAMDGNGIEYIPPSVLKKTDIGAAPGLYPNSRKALPTLSPKMILDRSQVSPSDETPCGGDSSCHKPLRGKKFLVVEDSQILRRIALAKLIQLGAIVEQCENGKQAVQLVDKGLIRDYPNPPYDYILMDCKSAGLPAFLNPKWLEGQPIRKASRPGRTKDREGQPTWKMPEMDGFEATRRIREIEKAHKNGVRIPIIALTADEMMTVTAMDFHIVKPIDTEKLLRAIKCIHTERI 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi261g00021 666 MobiDBLite consensus disorder prediction 583 601 - -
Sebi261g00021 666 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 293 IPR036890 -
Sebi261g00021 666 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 11 91 IPR036097 GO:0000155|GO:0007165
Sebi261g00021 666 SMART HKATPase_4 139 297 IPR003594 -
Sebi261g00021 666 CDD REC_hyHK_CKI1_RcsC-like 504 658 - -
Sebi261g00021 666 ProSiteProfiles Histidine kinase domain profile. 30 297 IPR005467 -
Sebi261g00021 666 PRINTS Bacterial sensor protein C-terminal signature 255 273 IPR004358 GO:0016310|GO:0016772
Sebi261g00021 666 PRINTS Bacterial sensor protein C-terminal signature 221 235 IPR004358 GO:0016310|GO:0016772
Sebi261g00021 666 PRINTS Bacterial sensor protein C-terminal signature 239 249 IPR004358 GO:0016310|GO:0016772
Sebi261g00021 666 Gene3D - 91 301 IPR036890 -
Sebi261g00021 666 ProSiteProfiles Response regulatory domain profile. 503 662 IPR001789 GO:0000160
Sebi261g00021 666 PANTHER TWO-COMPONENT HISTIDINE KINASE 600 659 - -
Sebi261g00021 666 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 139 295 IPR003594 -
Sebi261g00021 666 CDD HisKA 21 85 IPR003661 GO:0000155|GO:0007165
Sebi261g00021 666 MobiDBLite consensus disorder prediction 582 601 - -
Sebi261g00021 666 SUPERFAMILY CheY-like 599 661 IPR011006 -
Sebi261g00021 666 SMART HisKA_10 23 89 IPR003661 GO:0000155|GO:0007165
Sebi261g00021 666 Pfam His Kinase A (phospho-acceptor) domain 26 89 IPR003661 GO:0000155|GO:0007165
Sebi261g00021 666 SMART REC_2 502 658 IPR001789 GO:0000160
Sebi261g00021 666 Gene3D - 10 90 - -
Sebi261g00021 666 SUPERFAMILY CheY-like 499 563 IPR011006 -
Sebi261g00021 666 Gene3D - 491 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi261g00021 Sebi-Chr261 359359 363374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi261g00021 499 634 Histidine Kinase Gene Family AT2G47430 37.324 1.80e-18 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi261g00021 HATPase_c 5.5e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi261g00021 - - aprc:113873801 612.068