Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi261g00005 ATGGGTGAGAACGATGCTCTTTCAAAGAACAAACCTTCCACTGAACAGGACATTTCTGATGAGCTAGACCTGAAGATAAAGAAGTATCTCAGAGGTGAAGTTGCTAATTTGGAGGTTTTGAAAGATAAAAAGCTGAAGAGTCAATTAGCTATTAGAGAAGGATTATATGGAGAATCTGCTAAAGCTGCTGCCAAGCTGAGAAGGGAAGTAGATGACCAAGATAATCACGATTGCTTAATGTGTGTTGAGAATCAAGAGTGGCTTATGCCTAGCGAAGGAGGTTATCTCGAGGCTGAAGGCTCGGAGAAGACATGGAGGATCAAACAGGAGTCAATAGCTCGTGAAGTAGATATCCTAAGCTCAAGGAACCAATATGATATTGTTTTACCAGCACTTGGTCCATATACTATAGATTTTACTTCAAGTGGCCGGTATATGGCTATTAGTGGTCGTAAGGGCCATCTGGGAATTGTGGACATGATAAATCTGAGCCTAGTCAGAGAGTTTCAGGTAAGAGAAACCGTGTGTGATGTGGTATTCTTGCACAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAGTATCCATACATCTATAATCGTGAAGGCACTGAGCTTCACTGCCTCAAGGAACATGGTCCTGTGTTAAGGCTTCAGTTTCTTAAAAACCATTTTCTCTTGGCTACAATCAACAAATTAGGGCAGCTTCATTATCAGGATGTTACAACGGGTACTATGGTTTCTAATTTTCGAACTGGCTTAGGACGTACAAACGTGATGCAAGTAAACCCCTTCAATGGGGTCGTTTCTTTAGGTCACTCAGGTGGTACAGTTACTATGTGGAAGCCAACTAGTTCTGCCCCTCTTGTCAAGATGCTATGTCATCATGGTCCTGTCTCGGCACTGGCATTTCACTCAAATGGCCACTTAATGGCCACTGCCGGGAAAGATAAAAAGATTAAGCTTTGGGACTTGAGGAAGTTTCAGGTTCTTCAAACATTACCAGGCCTTGCAAATACTTTGGATTTTAGTCAAAAAGGCGTGCTTGCTTGCGGCACTGGTTCATTTATCCAGGTTCTGAGGGATGTCTCTGGTACACAGAACTATTCTAAGTATATGACTCATTCCATGGTGAAGGGTTACCAGATAGGGAAATTAGCTTTTCGACCATATGAAGATGTTCTAGGCATAGGGCATTCGATGGGCTGGTCTAGCATTCTTATTCCAGGATCAGGAGAACCCAACTTCGATTCATGGGTTGCAAACCCATTCGAAACATCTAAACAAAGGAGAGAAAAGGAAATACGGTCTCTTCTGGATAAGCTTCCACCTGAGACAATCATGTTGGATCCCAGCAAGATTGGTACTGTGAAAACAACAAAAAAAGAGAAGCCAACAATGCAAGAGAGGGAAGCTGAGATGGAAGCTGCTGTTGAAGCTGCTAAGGGCAAAAAACTGAAGAAGAAAACAAAAGGAAGAAATAAGCCAGGTAAAATAGCACAGAAAAAGCAAGAGGCGATTGATAGAGTGAAGAGGCCTTACTTGGAGGGGAAAATTCAAGAGGAGGAAAACATATCGAGAAAGAAACAAAAAACCATTGAGGGAGTTGAACTACCAAAATCCTTACAGCGGTTTGCTCGTAAGAAACCATCATCATAA 1656 0.4215 MGENDALSKNKPSTEQDISDELDLKIKKYLRGEVANLEVLKDKKLKSQLAIREGLYGESAKAAAKLRREVDDQDNHDCLMCVENQEWLMPSEGGYLEAEGSEKTWRIKQESIAREVDILSSRNQYDIVLPALGPYTIDFTSSGRYMAISGRKGHLGIVDMINLSLVREFQVRETVCDVVFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLKNHFLLATINKLGQLHYQDVTTGTMVSNFRTGLGRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSSAPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKFQVLQTLPGLANTLDFSQKGVLACGTGSFIQVLRDVSGTQNYSKYMTHSMVKGYQIGKLAFRPYEDVLGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKTTKKEKPTMQEREAEMEAAVEAAKGKKLKKKTKGRNKPGKIAQKKQEAIDRVKRPYLEGKIQEEENISRKKQKTIEGVELPKSLQRFARKKPSS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi261g00005 551 Gene3D - 103 258 IPR015943 GO:0005515
Sebi261g00005 551 SMART WD40_4 242 281 IPR001680 GO:0005515
Sebi261g00005 551 SMART WD40_4 162 199 IPR001680 GO:0005515
Sebi261g00005 551 SMART WD40_4 284 323 IPR001680 GO:0005515
Sebi261g00005 551 SMART WD40_4 120 159 IPR001680 GO:0005515
Sebi261g00005 551 MobiDBLite consensus disorder prediction 479 505 - -
Sebi261g00005 551 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 325 - -
Sebi261g00005 551 SUPERFAMILY WD40 repeat-like 133 399 IPR036322 GO:0005515
Sebi261g00005 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 332 IPR001680 GO:0005515
Sebi261g00005 551 SMART BING4CT_2 370 450 IPR012952 -
Sebi261g00005 551 FunFam U3 small nucleolar RNA-associated protein 7 123 405 - -
Sebi261g00005 551 Pfam BING4CT (NUC141) domain 371 449 IPR012952 -
Sebi261g00005 551 Gene3D - 259 407 IPR015943 GO:0005515
Sebi261g00005 551 PANTHER WD-REPEAT PROTEIN BING4 8 546 IPR040315 -
Sebi261g00005 551 Pfam WD domain, G-beta repeat 292 323 IPR001680 GO:0005515
Sebi261g00005 551 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi261g00005 Sebi-Chr261 89482 97204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi261g00005 183 363 U-box Gene Family AT2G33340 25.131 1.63e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi261g00005 K14768 - gmx:100802940 891.723