LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi260g00042	ATGTCTGGAGAAGTCATTGCTACTCCATCAGCTGCTTCTTTTGATTATGAGATCTTGGACAGTGATCCTGACATCGTTAGAACTGTTAGGGCCTCATCCAATCAAGCAAATCCATGGATTGAACCTGAAAGATTGAAACTTAGACACAGAATTGGTCGGGGGCCCTTTGGTGATGTTTGGCTAGCAACACATCATCAGTCAACTGAAGATTATGATGAGTACCATGAAGTTGCTGCTAAGATGTTATATCCAATCAGAGAAGAACATGTGAAGATTGTATTGGAGAAATTCAATGACTTATTCTATAAGTGCCAAGGAGTCGCTAGCGTTTGCTGGCTACATGGAATTTCAATCATAAATGGAAGGATCTGCATCATTATGAATTTGTATGAAGGTTCAATTGGTGACAAGATGGCTAGACTCAGAGAAGGGTGGATTTCATTGCATGATGTTTTGAGGTATGGAATCAACCTAGCTCAAGCTATTCTGGAACTTCACTCCAAAGGGATCCTCATTCTCAACCTTAAACCATTCAATGTTCTTCTCAATGATAATGATCAAGCAGTTTTGGGAGATGTTGGTATTCCCAGTCTTTTGCTTGGCTCCTCCTTCGTTAGCTCAGATATGGCTCAGAGGCTTGGAACTCCAAACTACATGGCCCCAGAACAATGGGAACCAGAGGTCAGAGGCCCTATATCCTTGGAAACAGATTCATGGGGATTTGGATGCACCATTGTTGAAATGTTGACTGGCAATCAACCTTGGTATGGATATCCTGTTGGTGCAATATACCAATCGGTTGTTGAAAAGCATGAAAAACCCCATATTCCAAGTGGCCTTCCTTCTTCAATTGAGAATATCCTTAGTGGATGCTTTGAGTATGATTTGAGGAATCGCCCTTCAATGGTGGAAATTCTGAATGTCTTTAAAAGCTCGCTGAGTGATCTGGCCAATGATGGAGGATGGGGATATCTAGGAAATGTGAAAGTTATTGCAAAATCAGGTAGCACTGACTACACAGAGTGGTTCCTGTCAAAGGATCATCTGCAGGTGGGTGACATGGTCCGATCTAGAAAGCCTCCCAATTCATGCAAAGCTCAAAACATGGATGTCCCAGAAGGAACTATTGTTGGTTTAGAACGTAATGCAGACCATGGGTTTGTTCTTGTGAGGGTCCATGGTATTCATGACCCTTTAAGAATTCATGTGTCAACTCTTGAACGTGTCACATTTGGCTTGGCAGCTGGTGATTGGGTACGCTTAAAGGATGAAAATGAGAAGCACTCTCCAGTGGGCATTCTACATTCCATCAATCGTAATGATGGTAGAGTGGCTGTTGCATTTATTGGGATGCAAACTCTTTGGACTGGAAATTCTTCAGAACTTGAAATGGCAGAATCATTCTGTGTGGGCCAATTTGTTAAGCTGAAAGACAATGTTTTAAGTCCTCGATTTGAATGGCGTCGCAAAAGGGGAGGATCCTGGGCTACTGGTAGGATTTCATGGATCCTACCAAATGGGTGTTTGATTGTCAAGTTCCCAGGGATGCTGACTTTTGGGAATGAATCTAGCACCTTCTTGGCTGATCCCTCTGAGGTTGAAGTGGTTGATTTTAACACTTGTCCTGGGATGATAGAAAAGTATCAACATGTAGAGGATCATCACTGGGCAGTTAGACCTGTTCTAATTGTATTCGGACTATTTACAGCTCTCAAACTAGGCATATTAGTTGGAAAGAAAGTGAGGAGGAACGTGAAGGTCAATGCAATAGAAAGCAAAACTCAATATCTTGATGGTCAAAATGCCAGCAAATCTTCCAATGCTGTTAGTCCTAGCAACACAGCATGGGTTCCTTCAGTTGCCAATATCCTTTTTAAAGAAGGTGTTAACACTTCCACTGGTCGGTAG	1908	0.4224	MSGEVIATPSAASFDYEILDSDPDIVRTVRASSNQANPWIEPERLKLRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLYPIREEHVKIVLEKFNDLFYKCQGVASVCWLHGISIINGRICIIMNLYEGSIGDKMARLREGWISLHDVLRYGINLAQAILELHSKGILILNLKPFNVLLNDNDQAVLGDVGIPSLLLGSSFVSSDMAQRLGTPNYMAPEQWEPEVRGPISLETDSWGFGCTIVEMLTGNQPWYGYPVGAIYQSVVEKHEKPHIPSGLPSSIENILSGCFEYDLRNRPSMVEILNVFKSSLSDLANDGGWGYLGNVKVIAKSGSTDYTEWFLSKDHLQVGDMVRSRKPPNSCKAQNMDVPEGTIVGLERNADHGFVLVRVHGIHDPLRIHVSTLERVTFGLAAGDWVRLKDENEKHSPVGILHSINRNDGRVAVAFIGMQTLWTGNSSELEMAESFCVGQFVKLKDNVLSPRFEWRRKRGGSWATGRISWILPNGCLIVKFPGMLTFGNESSTFLADPSEVEVVDFNTCPGMIEKYQHVEDHHWAVRPVLIVFGLFTALKLGILVGKKVRRNVKVNAIESKTQYLDGQNASKSSNAVSPSNTAWVPSVANILFKEGVNTSTGR	635

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sebi260g00042	635	Gene3D	Transferase(Phosphotransferase) domain 1	131	319	-	-
Sebi260g00042	635	CDD	STKc_PknB_like	46	311	-	-
Sebi260g00042	635	SUPERFAMILY	Protein kinase-like (PK-like)	42	309	IPR011009	-
Sebi260g00042	635	ProSiteProfiles	Protein kinase domain profile.	45	313	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Sebi260g00042	635	Gene3D	Phosphorylase Kinase; domain 1	24	128	-	-
Sebi260g00042	635	Pfam	Protein tyrosine and serine/threonine kinase	45	307	IPR001245	GO:0004672\|GO:0006468
Sebi260g00042	635	PANTHER	OS06G0639500 PROTEIN	1	632	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi260g00042	Sebi-Chr260	1130666	1134410	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi260g00042	51	307	MAP Kinase Kinase Kinase	AT1G05100	27.660	6.27e-18	84.0

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-1	Sebi260g00042		PK_Tyr_Ser-Thr	2.7e-29	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi260g00042	-		-	gsj:114393396	1068.53

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