Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi260g00030 ATGTCTAAGGTGTTTCAATTTCGATCAAAGATCAACCCATCTCAGGCATTGATAATGATTGAACCTACTTTCTGGGAGAAAGTAAAAGGAGATATACCTCAGAATTGTGTGCTTATAGATCCTGCTGAGAATACGTTTCCTGTTTTGGTAGTAGATAACGGTGATAGTGTTGCGTTTGTTAAGGGCGTTGATGAAATTTGTAGAATCTATAGGCTAGAAGAAACTCATAACGTCGTGTGTACTTACTTTGGGGATGATGAGTTCAAAATACAAATATTGAATGGGGACAATATGGTAGTAAAGTGTCCGGATATTATAAACAATGGTGTGCATTTAGAGTTCTCTGATACTGATTCTATTCAAGATCTTGGACCTTTCCTTTTGTGGAGGGTTAATCTGTCTAAGGCTGCTGCTTCGGGTATAAATGTAATGCCTATACCTGCTAGGTTAGTGACAAGTCTTCTGGATGGAAACCAATCATATGTTGATATCATAGATGAGGACTCTAATCTCACATCCTGCAAATTGTTGAGACCTAAAAGGAGGAAAACTGAGCGGTACATAGCTGGCAGTTGGTGCCAGTTTATTCGGGGAAAGAACTTGAAAGAGGGGGATGTGCTTGGCTTTTACTCCGCTAATAACATGAAAAGTCTTCATGGCAAAATTGGCATCAGTGAAAATTTTTGGACAAAATGGTATTCCCACTTACCCTCCGAGGTCTATTTTATAGATCCTGTTGGGAATTCTTTCCCAATAGGTATTAGTTCAAAGGGAGATAGTGCTATCTTTGAAAGAAATGTGAACACAATGATTAGCTTTTATGGGCTCAATAGAAAGCATAGTGGTCTTTTTTGCTACATGGGTGGGAACCAATTCTACATAAGGCTAGGAAATCGTTACGGGGTTGAGATTAATTATCCCCAAAAGCCAATTGAGTATCCTAAGGACTTCCCTTTCTGGATTTTCACAATGACCAAGTCATCTGCTTCAGGGAAGAATGCTTTGCCTATTCCTGCACATTTTGTCAGAGAGGGGCTTCTAGAAAGTCAGCGAGAATTGACTTTAAGACTTAGCAACGGTGAACAGATTCTTTGCAAAATATCAAAAGGTTCTAGAAGGAAGGATGAACGATATCTCTGTAGTGGTTGGTACAAGTTTTGTCGCAACAACAACTTCAAAGAGGGAGATATGTTGTTGTTTTATTCAAAGGGTGATGCTTACAATCTGTGTGTTAGGATAAAGCGCTCCTAA 1251 0.3917 MSKVFQFRSKINPSQALIMIEPTFWEKVKGDIPQNCVLIDPAENTFPVLVVDNGDSVAFVKGVDEICRIYRLEETHNVVCTYFGDDEFKIQILNGDNMVVKCPDIINNGVHLEFSDTDSIQDLGPFLLWRVNLSKAAASGINVMPIPARLVTSLLDGNQSYVDIIDEDSNLTSCKLLRPKRRKTERYIAGSWCQFIRGKNLKEGDVLGFYSANNMKSLHGKIGISENFWTKWYSHLPSEVYFIDPVGNSFPIGISSKGDSAIFERNVNTMISFYGLNRKHSGLFCYMGGNQFYIRLGNRYGVEINYPQKPIEYPKDFPFWIFTMTKSSASGKNALPIPAHFVREGLLESQRELTLRLSNGEQILCKISKGSRRKDERYLCSGWYKFCRNNNFKEGDMLLFYSKGDAYNLCVRIKRS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi260g00030 416 PANTHER B3 DOMAIN-CONTAINING 323 413 - -
Sebi260g00030 416 Gene3D - 3 96 IPR015300 -
Sebi260g00030 416 ProSiteProfiles B3 DNA-binding domain profile. 320 416 IPR003340 GO:0003677
Sebi260g00030 416 SUPERFAMILY DNA-binding pseudobarrel domain 314 411 IPR015300 -
Sebi260g00030 416 Pfam B3 DNA binding domain 323 415 IPR003340 GO:0003677
Sebi260g00030 416 CDD B3_DNA 320 415 IPR003340 GO:0003677
Sebi260g00030 416 SMART B3_2 321 415 IPR003340 GO:0003677
Sebi260g00030 416 SMART B3_2 7 96 IPR003340 GO:0003677
Sebi260g00030 416 SMART B3_2 129 225 IPR003340 GO:0003677
Sebi260g00030 416 Gene3D - 308 416 IPR015300 -
Sebi260g00030 416 Gene3D - 117 222 IPR015300 -
Sebi260g00030 416 SUPERFAMILY DNA-binding pseudobarrel domain 12 94 IPR015300 -
Sebi260g00030 416 SUPERFAMILY DNA-binding pseudobarrel domain 127 216 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi260g00030 Sebi-Chr260 831714 833967 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi260g00030 B3 3.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi260g00030 - K08766 vun:114194236 65.4698