Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi260g00019 ATGGTACAAGCAAAGAAGTTCAGGGGAGTCAGACAGCGCCAGTGGGGCTCATGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGAAGGGTATGGCTTGGTACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAGTGGTCACAATGCCAAGACCAATTTCCCTTTTACACCAAATGTTCAACCTGAAGGTTCCAATGCCACAGCAAATCATTATGACTCTTTCTTCTCTCCCAAGGCTCTTTCTGATCTCCTGAGCAAAAAGCTCATGAGGAAGTGCTGCAAAGACCCTCCTTCTCCATCCCTCACTTGTCTGAGGCTTGATGCTGACAATTCTCACATTGGAGTGTGGCAAAAAGGTGCAGGATCAGATTCAGACTCTAATTGGATCATAAGGGTAGAGCTTGGAAAGAAAAATGCAGAGGGTGAGTCAACTTTGTCAACAGAATCACCACCAAACACTATTGATGATGCTGGAAATGAGGTGGATGAAGAAGAGGACAGAGTGGCCGTACAGATGATTGAAGAGCTACTTAATTGGAACAATCCATGTGATTCAAGTAACTTTCAGGAAGAAAAATGGAACCTTTCTTGTCAGAGTTCTTGA 630 0.4492 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGHNAKTNFPFTPNVQPEGSNATANHYDSFFSPKALSDLLSKKLMRKCCKDPPSPSLTCLRLDADNSHIGVWQKGAGSDSDSNWIIRVELGKKNAEGESTLSTESPPNTIDDAGNEVDEEEDRVAVQMIEELLNWNNPCDSSNFQEEKWNLSCQSS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi260g00019 209 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Sebi260g00019 209 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Sebi260g00019 209 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Sebi260g00019 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 157 - -
Sebi260g00019 209 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Sebi260g00019 209 MobiDBLite consensus disorder prediction 149 173 - -
Sebi260g00019 209 Pfam AP2 domain 6 56 IPR001471 GO:0003700|GO:0006355
Sebi260g00019 209 MobiDBLite consensus disorder prediction 149 163 - -
Sebi260g00019 209 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Sebi260g00019 209 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Sebi260g00019 209 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Sebi260g00019 209 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi260g00019 Sebi-Chr260 605628 606653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi260g00019 1 198 AP2-EREBP Transcription Factor Family AT5G25390 59.799 2.29e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi260g00019 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi260g00019 - - lang:109326202 268.085