Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi260g00012 ATGGGAGAAACAAAGGACGAAGGATACGAGGAAGAGCTTCTTGACTACGAAGAGGAAGAAGACAAGGCCCCTGATTCCGTAGGAGCTAAAGTCAACGGCGAAGCTGCGAAGAAGGGCTATGTTGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTCCGGGCTATTGTGGACTCAGGATTTGAGCATCCTTCTGAAGTGCAACATGAATGCATACCTCAAGCAATCCTCGGAATGGATGTAATTTGTCAAGCTAAATCTGGAATGGGCAAAACTGCTGTCTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTGCAGGCCAAGTTTCTGCTCTTGTTCTGTGTCATACTAGGGAATTGGCATACCAGATATGCCACGAGTTTGAAAGGTTCAGCACCTACTTGCCTGATCTCAAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGTACACCTGGAAGAATTCTAGCATTGGCCAGGGATAAGGAACTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAAAGATGTGCAAGATATTTTCAAGATGACTCCCCATGATAAGCAAGTCATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAAAAGTTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTTCATGGACTTGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAATGATCTACTTGATGCTCTCGACTTCAATCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCCGCTGAGCTGGACAAACTGCTTGTGGAGTGCAACTTCCCATCTATTTGCATTCATTCTGGAATGTCTCAGGAAGAAAGGTTAAAGCGATACAAAGGTTTTAAGGAGGGGCATACAAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATCGACATTGAACGAGTGAATATAGTCATAAACTATGACATGCCTGATTCTGCTGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCATGCGCTACTGATGTTGATGTTCTCAACAATGTTCAGTCCAGGTTTGAGGTAGACATAAAACAGCTTCCTGAGCAGATTGATACATCTACCTACAAATGCAGCAGGGAAACAGAGCACCCTAGGTGGGAGGAAATTGTTAATATGAATGGGCGTGGATCCTCAATTCAAGAAGAAATGAGGGTGAAAAATGGTGTGAAGATCAGAAGAGGAAGAAATAAATGGGTTGGGCCCATGGTAATAAATGAACGTAAAAAGGTTAAGGACTTACTTATAATTAGCCTTTTGATCTTTACTGCCTCCTGCAACTCATGGGTCGGACAAAGCCAGAATATCTTTGACGTGCTTCAGTATGGTGCCAAAGGAGATGGCCGTTCTGATGATACCCTAGCTTTTGAAGAAGCATGGAAATCTTTATGTGGAGCAAGGAATGGGACTGCAACGCTTGTGGTGCCAGCTGAGCACACATTTTATTTGCGTCAAATAAGATTCAAAGGTCCCTGCCAATCCAAAATTCATATTAAGGGGATGACAGTTGATGGATCAGGAGTGATCAATGGTCAAGGTCAAGCTTGGTGGGGCAATCTGAATGGAACTGCAGGATGCAGAGGAGTACCTACGGCTCTATTATTCGAAAAATGTGATGGTCTTCAAATAAGTGGACTCACTCATATCAATGGGCCAGGATCACATATCTATGTGGTCCATAGCAAAGACGTAACCATCTCACGAGTTAACATACAATCGCCATTAGAAAGCCATAACACCGATGGAATTGATGTGTCAAACTCAATTCGGGTTAACATTCAAGACTCTATAATAGGAACCGGTGATGACTGCATTGCTCTCAAAGGTGGCTCACAATTCATCAACATTACCCAAGTTACATGTGGACCTGGTCATGGCATTAGTGTGGGGAGTCTAGGGGTTGATGGAGAAGAGGAATTCGCAGAACATGTGAATGTCAGAGAATGCACATTCAATGGAGCTGATAGTGCAGCTAGAATCAAGACATGGCCAGGTGGAAAAGGATACGCCAAGGCAATCATCTTTGAGAATATCAAAGTCAATCAAACAAATTACCCTATATATATTGACCAACATTACATGATGACTCCAGAAAAGGGAGACGCAGTAAAAGTGAGTGACGTCACATTCAGTAACATCTATGGAACATGCAGCAGCGAGAATGCAGTTGTGCTTGATTGTGCAAAGATAGGGTGTGACAATATTACCCTCAGACAAATCAACATTACCTCAATTGATCCAAAGAAGCCACCTTCTGCAACATGCAATAATGTTCATGGGACAGCCACTGATATTACTTCACCTCCTGTGCCTTGTCTACGTTCCTAA 2532 0.4265 MGETKDEGYEEELLDYEEEEDKAPDSVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCATDVDVLNNVQSRFEVDIKQLPEQIDTSTYKCSRETEHPRWEEIVNMNGRGSSIQEEMRVKNGVKIRRGRNKWVGPMVINERKKVKDLLIISLLIFTASCNSWVGQSQNIFDVLQYGAKGDGRSDDTLAFEEAWKSLCGARNGTATLVVPAEHTFYLRQIRFKGPCQSKIHIKGMTVDGSGVINGQGQAWWGNLNGTAGCRGVPTALLFEKCDGLQISGLTHINGPGSHIYVVHSKDVTISRVNIQSPLESHNTDGIDVSNSIRVNIQDSIIGTGDDCIALKGGSQFINITQVTCGPGHGISVGSLGVDGEEEFAEHVNVRECTFNGADSAARIKTWPGGKGYAKAIIFENIKVNQTNYPIYIDQHYMMTPEKGDAVKVSDVTFSNIYGTCSSENAVVLDCAKIGCDNITLRQINITSIDPKKPPSATCNNVHGTATDITSPPVPCLRS 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi260g00012 843 CDD DEADc_DDX39 45 252 - -
Sebi260g00012 843 SMART pbh1 656 677 IPR006626 -
Sebi260g00012 843 SMART pbh1 768 795 IPR006626 -
Sebi260g00012 843 SMART pbh1 709 730 IPR006626 -
Sebi260g00012 843 SMART pbh1 738 759 IPR006626 -
Sebi260g00012 843 SMART pbh1 629 655 IPR006626 -
Sebi260g00012 843 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Sebi260g00012 843 MobiDBLite consensus disorder prediction 1 22 - -
Sebi260g00012 843 SMART ultradead3 65 266 IPR014001 -
Sebi260g00012 843 MobiDBLite consensus disorder prediction 1 27 - -
Sebi260g00012 843 SMART helicmild6 302 383 IPR001650 -
Sebi260g00012 843 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Sebi260g00012 843 SUPERFAMILY Pectin lyase-like 497 841 IPR011050 -
Sebi260g00012 843 Pfam Glycosyl hydrolases family 28 563 829 IPR000743 GO:0004650|GO:0005975
Sebi260g00012 843 Gene3D - 42 258 IPR027417 -
Sebi260g00012 843 Gene3D - 492 839 IPR012334 -
Sebi260g00012 843 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Sebi260g00012 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 397 IPR027417 -
Sebi260g00012 843 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Sebi260g00012 843 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 402 - -
Sebi260g00012 843 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Sebi260g00012 843 CDD SF2_C_DEAD 263 392 - -
Sebi260g00012 843 Gene3D - 259 427 IPR027417 -
Sebi260g00012 843 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Sebi260g00012 843 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi260g00012 Sebi-Chr260 474602 497373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi260g00012 1 427 Eukaryotic Initiation Factors Gene Family AT5G11200 82.729 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi260g00012 K12812 - gmx:100808957 817.379