Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi25g00078 ATGACTTATCAAGTCATCAATACCATCCTTTGGTGCTTTGTGCTAGCTATTGTGATCATCGGCTTTTTCACTTCAAATGTTAGTTCTACCAATAATCATTCCAAGATAGAAAAAAGCTTGGAAATGAATGTGATTGATCAATGTTGGAGGTTAAATCCTGAATGGAGGAGACATCGACAACAACTTGCCCATTGCTCAGTGGGGTATGTAGGGAAGATGACAAACAACATAGGCGAAGACCTCATCCATTATAAAGTTACTGATCCTAGTGACGACCCAATAAACCCTAAACCTGGCACCTTGAGATATGGAGCTTCTATGATTCAAGGGGTCAATGTCCACATTGCTGACAATGCATGCTTGATGATCTATAAGGCAACAAACATAATCATCCATAACATTAGGATTCATCATTGCCGACCTCAAACTCCTGGAATGGTGATGGGTCCTAATGGAAAGATGGTCTTCTTGATGTCACAAGGGGTTTCCACTGATGTGACGGTCTCTAACAATTGGTTCAGGCAACAAAATAAGGTTATGCTTCTTGGACATGATGATGGGTTTGTTAGAGATAAGAACATGAAGGTCACCGTTGTGTACAACTATTTTGGACCTAATTGCCACCAACGGATGCCAAGAATCCGCCATGGGTATGCACATGTTGCCAACAATCTTTATATGGGATGGGTGCAATATGCCATAGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAATCGAACCTCTTCATAGCACCAACTTCAGGGAATAAAGAGGTAATTCATTCAA 787 0.413 MTYQVINTILWCFVLAIVIIGFFTSNVSSTNNHSKIEKSLEMNVIDQCWRLNPEWRRHRQQLAHCSVGYVGKMTNNIGEDLIHYKVTDPSDDPINPKPGTLRYGASMIQGVNVHIADNACLMIYKATNIIIHNIRIHHCRPQTPGMVMGPNGKMVFLMSQGVSTDVTVSNNWFRQQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSESNLFIAPTSGNKEVIHS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi25g00078 262 Gene3D - 42 154 IPR012334 -
Sebi25g00078 262 SUPERFAMILY Pectin lyase-like 83 255 IPR011050 -
Sebi25g00078 262 Gene3D - 155 262 IPR012334 -
Sebi25g00078 262 SMART amb_all 91 255 IPR002022 -
Sebi25g00078 262 PANTHER PECTATE LYASE 18-RELATED 31 105 IPR045032 GO:0030570
Sebi25g00078 262 Pfam Pectate lyase 162 249 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi25g00078 Sebi-Chr25 2856116 2857411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi25g00078 73 261 Polysaccharide Lyase AT5G09280 50.800 1.46e-86 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi25g00078 K01728 - gmx:100811216 417.542