Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi25g00066 ATGGATGTATTGACAAAAAAGTTCCTTGATCCAGTGCTGCTAATTCATAAAGCCAGCAATTTAAGAAGGGAACTTGAATATGGAACAGCTTATGTGTACCAGGGAGAAGCTAATTGCCCTGAAAATGGTAAACAATTGGAAGCTGATCAACTGAAGGACTCATTACTAAAGATGGAAGAGCCTCATATGAAAAGGCAAGGTCAAGTGCAACACATTAGTTGTAAACACTTGACTAATTCAGATTGTAAAGGCAGTGGAGTTTGCTTCCATGATGAAATAAATGAAACTTTTTTAACCTCTGAGAACTCTCTCTCTATTGTGCGCATGATTGAAAGTGAATCACAAAACAACAGCAGGGAAGGAGAATTGCCATTTTCTGAACCCACTTGGCTGCAGGGGGACGAGTCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGCATCAAATGTGCAAGGGCTGACTGGCCATTATCAACCTTGAAAGCAAAACCAACTCATGACCGGAAGAAATATTTTGTGATTTTTTTCCCTCACACAAGGAATTATTCTTGGGCTGATATGCTGCTTGTTCGATCAATTGATGAGTTTCCTCTGCCTATAGCATATAAAACCCATCAGGCAGGATTGAAAATGGTAAAAGACTTGACTGTTGCACGACGGTTTATAATGCAAAAGCTAGTCCTTGGCATGCTGAACATTGTCGATCAGCTTCATTCTAATGCTATGATAGAAACTGCTCGTGATGTCATGGTTTGGAAGGAATTTGCGATGCAGGCTTCTCACTGTAATGGTTATTCAGATTTTGGAAGAATGCTTCTAAAGCTGCGAAATAGCATAGTGCAGCTTTACATAAATGCTGACTGGATAAAACATTCGTCTTACTCTTGGGCTGAACGATGCCAGAATGCTAAGAGTGCTGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACACTCTCTGGGGTGCACTGGTGCAGCCAACATTAGGTTCTGAGTGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTCCACATTTCCTTCCTTTTCTAGTAGCAAGGACATGCAGCAGCAGACCTCTGATGGTTTATACCAAGTAAGCCTTCAGATTGGTAGAAAAAGACCCAAACTGGAAGTTCGTCGTGCAGATACACATGCTTCACTGGCGGTAACCAAGGGTTCAGACCACTCTATTACTCTTGAAACTGACCCAGGTTTCTTTAAGAATCAGGGCACATTGAGTGCACTGGCAGCTGAGACTTCTCAACAGGAAGATGTTAGAGAGGTACCTATAGCAACTGATTTACCTAGTAATTTGAGCAATCAATGGAATGAAATTGTAGTTGAGGCTGCAGATTCTGAGATCTTGGAAAGCAATGGAAAGGAATTAATACCAGTTGATGAAATGGCTGGTCAGAAATTTATAGAATCTGCTACTAAGAATCGGCAATGTATAGCTTATATTGAAGCCAAGGGGAGGCAGTGTGTGAGATGGGCAATTGATGGTGATGTATACTGTTGTGTGCATTCTCGTTTTTTGGGCAGCTCAGGAAAAGCCAAAAGAGCTGGTTTAATTGATACTCCAATATGTGGAGGCACAACTGTTCTTGGTAGTAGATGTAAGCATCATTCCGCTCCTGGCTCTTCATTCTGTAAGAAACACCAGCCCCATGCTGAAACAGAAGATACCACAAATTTAACCCGTCATACACTGAAGAGGAAACATGAAAATTATACTGGTTCAGATTGCTTGATTTGCAAAGAAATGGTATTGGTAAATGCTGATAGTCCACTGCAAGTAGATCCAGTGTTAGCCATTGATGGTGATTCTTTCCTTGGAAGAAACAGCTTTGGTGAGATGCCTATCCTTTCTGGCAGTGATCGTAAAGCAACAGAGCCACTTCACTGTATAGGATCTCCTCCCAATGATAATGAGGACCCTTGTTTGGAAGCACCAACCCGGTTTTTCTTGTACTGTGAAAAGCATCTTCCATGCTGGCTTAAATGTGCAAGAAATGGGAAGAGTAGGATAATATCAAAAGAAGTGTTCACAGAAATTTTGAGGGACTGCTGCTCATGGGAGGAAAAGGTGCATTTGCATAAAGCATGTGAGCTTTTTTACATGCTGTTCAAAAGCATTTTGTCGTTAAAAAGTCCATTACCTAAGGAAGTTCAATTCCAACAGGCCTTGACTGAAGCCTCACAAGATTCTCATGTTGGAGAATTATTTAGAAAGTTGGTTAATAGTGAAAAGGAGAATATAAAATTGAATTGGGGATTCAATGAGGACATATCCTCACTCATGGAAGGACCACCTCTCCTGCCTTCTACGATTAATGACAGCTTTGATGATGAAAATGTCATTAAGTGTAAGATCTGCAGTGCAAAATTTCCTGATGACCAAACACTTGGTAACCATTGGATAGACAATCATAAAAAGGAAACACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATTTGTCTGGATTCTTTTACTAACAAGAAACTATTGGAAACCCATGTTCAGGAGAGACACCATGTGCAGTTTGTTGAACAGTGCTTGCTTCTCCAATGTATTCCTTGTGGTGATCATTTTGGAAATATGGAGCAATTATGGTTGCATGTCCTGTCAGTTCACCCTGTTGAACTTAAGCCATCAAAAGATCCTGAGCAGGGAACTTTGTCTAATGGCAAGGGTTCTCCAGAAAAACTTGAGCAGGGAAATTCAGTTTCATTGGACAATAATTCTGAGAATCCAGGTGATTTGCGGAAGTTCACTTGCAGGTTCTGTGGGTTGAAATTTAATTTACTACCTGACCTAGGTCGCCATCATCAAGCTGCTCATATGGAACGGAATATAGTCAAGAGCCGCCCTGCAAAGAAGGGAGTTCGTTATAATGCTCATAAATTAAAATCTGGCAGACTTGGTCCTAAATTTAAAAAAGGTCTCACAGCAGCATCATATAGGATCAAGAATGCAGGTAATGCTAATTTAAAGAGACATATTCAGTCAACAAAGTCACTTGACATGGGAGAAACAAGCATGCAACCTCAAGTAACTAAGACAGCAGATATTGGCGAACTGACAGAAAATCAATGCTCAGCAGTTTCAAAGACATTGTTTTCTGAGATTCAGAAGACTAAACCCCGGCCTAACAATCTTGATATTTTGTCAATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTAAAGCCTCGCTGGAGGAAAAATATGGAACTTTGCCGGAAATGCTCTATTTGAAGGCAGCAAGACTTTGCAGTGAGCATGAAATTCTAGTGAATTGGCATCAGGAGGGGTTCATTTGTCCAAGAGGTTGTAAGGAATTTAAGGATCAAAGACTGCTCTCTCCCTTAGCATCTGTTTCTAATGGCTTCCTAAAGCCAAAATCGGTTTCTAATGTATCAGATCCTGCAAGCAATGAGTTGGAAGTGGATGAGTTTCACTACATCATCAATTCACACCATTTAAAGCCTTGGGAGAGCTTTACCTATGTTACGAAGCCAATGCTTGATCAATCACTTTGTCTTGATTCCGAGAGTTTGCAACTGAGATGCGCTTGCTCATTTTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGCTAAGTTCCCATATGATGAAAATGGTCGAATAATACTGGAGGAAGGTTACCTTGTGTATGAGTGTAGCCGTATGTGCAGATGCAACAAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGGGTTAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGGAGTAAGGGCTGGTGAGGCTATTATGCGTGGAACATTTGTGTGTGAATACATTGGAGAGGTTTTACATGAGCAGGAGGCACACAACAGACGCAAAAGATATGGCAAAGAACATTGCAGTTATTTCTTTGAGGTTGATGCTCATATTAATGACATGAGTAGATTGCTCGAAGAACAGGCCCGATATGTCATTGATGCTACTAGATATGGAAATGTCTCTAGGTTCATCAATAACAGTTGCTCACCCAATCTTGTGAGTTACCAAGTTCTTGTAGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTTTATGCAAATCGAGATATTGCTTTGGGTGAAGAATTGACATTTAATTATCATTATGAGCTTGTGCCTGGAGAAGGATCTCCTTGCCATTGTGGATCTTCGAATTGCCGGGGACGCCTTTACTAG 4308 0.4095 MDVLTKKFLDPVLLIHKASNLRRELEYGTAYVYQGEANCPENGKQLEADQLKDSLLKMEEPHMKRQGQVQHISCKHLTNSDCKGSGVCFHDEINETFLTSENSLSIVRMIESESQNNSREGELPFSEPTWLQGDESVALWVKWRGKWQAGIKCARADWPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSIDEFPLPIAYKTHQAGLKMVKDLTVARRFIMQKLVLGMLNIVDQLHSNAMIETARDVMVWKEFAMQASHCNGYSDFGRMLLKLRNSIVQLYINADWIKHSSYSWAERCQNAKSAESVELLKEELFDSILWNDVNTLWGALVQPTLGSEWKTWKHDVMKWFSTFPSFSSSKDMQQQTSDGLYQVSLQIGRKRPKLEVRRADTHASLAVTKGSDHSITLETDPGFFKNQGTLSALAAETSQQEDVREVPIATDLPSNLSNQWNEIVVEAADSEILESNGKELIPVDEMAGQKFIESATKNRQCIAYIEAKGRQCVRWAIDGDVYCCVHSRFLGSSGKAKRAGLIDTPICGGTTVLGSRCKHHSAPGSSFCKKHQPHAETEDTTNLTRHTLKRKHENYTGSDCLICKEMVLVNADSPLQVDPVLAIDGDSFLGRNSFGEMPILSGSDRKATEPLHCIGSPPNDNEDPCLEAPTRFFLYCEKHLPCWLKCARNGKSRIISKEVFTEILRDCCSWEEKVHLHKACELFYMLFKSILSLKSPLPKEVQFQQALTEASQDSHVGELFRKLVNSEKENIKLNWGFNEDISSLMEGPPLLPSTINDSFDDENVIKCKICSAKFPDDQTLGNHWIDNHKKETQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCLLLQCIPCGDHFGNMEQLWLHVLSVHPVELKPSKDPEQGTLSNGKGSPEKLEQGNSVSLDNNSENPGDLRKFTCRFCGLKFNLLPDLGRHHQAAHMERNIVKSRPAKKGVRYNAHKLKSGRLGPKFKKGLTAASYRIKNAGNANLKRHIQSTKSLDMGETSMQPQVTKTADIGELTENQCSAVSKTLFSEIQKTKPRPNNLDILSIARSACCKVSLKASLEEKYGTLPEMLYLKAARLCSEHEILVNWHQEGFICPRGCKEFKDQRLLSPLASVSNGFLKPKSVSNVSDPASNELEVDEFHYIINSHHLKPWESFTYVTKPMLDQSLCLDSESLQLRCACSFSTCCPETCDHVYLFDNDYDDAKDIFGKPMRAKFPYDENGRIILEEGYLVYECSRMCRCNKTCPNRILQNGIRVKLEVFKTEKKGWGVRAGEAIMRGTFVCEYIGEVLHEQEAHNRRKRYGKEHCSYFFEVDAHINDMSRLLEEQARYVIDATRYGNVSRFINNSCSPNLVSYQVLVESMDCERAHIGLYANRDIALGEELTFNYHYELVPGEGSPCHCGSSNCRGRLY 1435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi25g00066 1435 Pfam Pre-SET motif 1173 1272 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi25g00066 1435 MobiDBLite consensus disorder prediction 901 929 - -
Sebi25g00066 1435 Gene3D SET domain 1166 1435 IPR046341 -
Sebi25g00066 1435 SMART c2h2final6 868 891 IPR013087 -
Sebi25g00066 1435 SMART c2h2final6 800 823 IPR013087 -
Sebi25g00066 1435 SMART c2h2final6 937 960 IPR013087 -
Sebi25g00066 1435 SMART c2h2final6 834 857 IPR013087 -
Sebi25g00066 1435 Pfam Zinc finger C2H2-type, 3 repeats 836 961 IPR040689 -
Sebi25g00066 1435 ProSiteProfiles Post-SET domain profile. 1419 1435 IPR003616 -
Sebi25g00066 1435 SUPERFAMILY SET domain 1167 1425 IPR046341 -
Sebi25g00066 1435 MobiDBLite consensus disorder prediction 896 929 - -
Sebi25g00066 1435 Gene3D Classic Zinc Finger 795 865 - -
Sebi25g00066 1435 ProSiteProfiles Zinc finger C2H2 type domain profile. 937 965 IPR013087 -
Sebi25g00066 1435 ProSiteProfiles Zinc finger C2H2 type domain profile. 834 857 IPR013087 -
Sebi25g00066 1435 SMART set_7 1280 1418 IPR001214 GO:0005515
Sebi25g00066 1435 ProSitePatterns Zinc finger C2H2 type domain signature. 939 960 IPR013087 -
Sebi25g00066 1435 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1175 1435 - -
Sebi25g00066 1435 Pfam SET domain 1291 1411 IPR001214 GO:0005515
Sebi25g00066 1435 ProSitePatterns Zinc finger C2H2 type domain signature. 870 891 IPR013087 -
Sebi25g00066 1435 ProSitePatterns Zinc finger C2H2 type domain signature. 802 823 IPR013087 -
Sebi25g00066 1435 ProSiteProfiles SET domain profile. 1280 1412 IPR001214 GO:0005515
Sebi25g00066 1435 SMART PostSET_3 1419 1435 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi25g00066 Sebi-Chr25 2209882 2218125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi25g00066 120 1434 C2H2 Transcription Factor Family AT2G23740 49.237 0.0 1291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi25g00066 zf-C2H2_3rep 1.7e-65 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi25g00066 - - gmx:100808203 2222.97