Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi25g00044 ATGGATTCTCAAGACCAAAAAATTAAGCTGAATGATGAGTTACATCAGGAAGCGTCAGATTCTGAGAAACCATTGAAAAAGATAGAGAAGATGAACTCTTCACCTTCTGAGTTTTGTAAACCTAGTGATAAACTAAAGGGTGATGAAGAAGATATTTCTACAAGCAAGAAAGCAGCGGCATCAGGAGTCCACCCGTGTGAGTTTTGTGACAAGAATTTCCCATCTGAAAAGTCATTGCATGACCATTTGAGATCCCACCCTGAAAGGTTTTGGAAGGGTGTTCACCCTCCTGAACCATCATCTCAAAGTCAAAATTCAAACTACTCCATGGAAGAGAATAATGATAGAGATGATAATGGTGGCCAAATTTTAAGTGCAACAATGGAAGCAACTATTGATATATCAAAGTATTTGCCACTAAGTTGGAATAAGACCGATAAAAGAGGTCGTGCATGTACTTATAGAAATGAGGATATTATTGCTGCTCAAATACTTATGTTCAAGTCTCGAGATAATAAGAAGACGTCACATTCAATGGTAAATCCTAAATTATCTCAACATGCCAACCTCAATAAGACTGGTGATGAGTGTGATAAGAATAATGGAGAGAAGAGTATAAAGGCTGAGGTAATACGTAGTGAGTTGCATGATCAAACAGTTGTAATGATGAATAAGAAGAATAATAAGAAAATCAAGCTACTAGTGAAACAGAAGAATCCAAATGAAGAATCTGAAGAGAAGATCTTGCCTGCACCAGAAGATGACAATGAAGAAGAAAGTCAATCAGGTCTACAAATTCACGATTTTGATTTGAACGAGCGAACGAATGTTATGGAGAAGGAAACAAACTAG 852 0.3685 MDSQDQKIKLNDELHQEASDSEKPLKKIEKMNSSPSEFCKPSDKLKGDEEDISTSKKAAASGVHPCEFCDKNFPSEKSLHDHLRSHPERFWKGVHPPEPSSQSQNSNYSMEENNDRDDNGGQILSATMEATIDISKYLPLSWNKTDKRGRACTYRNEDIIAAQILMFKSRDNKKTSHSMVNPKLSQHANLNKTGDECDKNNGEKSIKAEVIRSELHDQTVVMMNKKNNKKIKLLVKQKNPNEESEEKILPAPEDDNEEESQSGLQIHDFDLNERTNVMEKETN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi25g00044 283 MobiDBLite consensus disorder prediction 77 93 - -
Sebi25g00044 283 MobiDBLite consensus disorder prediction 236 283 - -
Sebi25g00044 283 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Sebi25g00044 283 MobiDBLite consensus disorder prediction 41 55 - -
Sebi25g00044 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Sebi25g00044 283 Gene3D Classic Zinc Finger 41 121 - -
Sebi25g00044 283 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 16 209 - -
Sebi25g00044 283 SMART c2h2final6 64 86 IPR013087 -
Sebi25g00044 283 MobiDBLite consensus disorder prediction 77 121 - -
Sebi25g00044 283 MobiDBLite consensus disorder prediction 1 30 - -
Sebi25g00044 283 MobiDBLite consensus disorder prediction 1 62 - -
Sebi25g00044 283 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi25g00044 Sebi-Chr25 1249990 1251078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi25g00044 59 97 C2H2 Transcription Factor Family AT2G17180 48.718 2.51e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi25g00044 zf-C2H2_jaz 3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi25g00044 - - cam:105851665 117.087