Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi25g00003 ATGGCTATGATTGTAGATGCTGTTCTTGGGCATGTGGTTGATGAACTGCTGACTTCAGTTTCGGAAATGAAGGACAAGGCTGTTAAGTTCAAACCCACTCTGGAACAAATGGAGAAGACCCTCAAATCAATAGGACCAGTGGTTAATCAGATTGAAGAACTTAACAAGAGATTGGATCGGTCACCAGAGGAAACTGATAGGCTGATCAATCATATGAGAAGTGGCAAGGAGCTTGTTCTCAAGTGTTCTAAAGTTCAGTGGTGGAACTGCTGCTATAAGGCCAATTACCAAGAGGAACTTCAAGCATTAGATGAAGAAATTATTAGGTTCTTTCAGATAGATATGCAAGGTCAGAATACCAGGAATGGATTGGAGGCCCTAGTGGAGATTAGAGAGTTTCGTGCTGAATTTAGAAATGCTGTTCCGAGAAATGAAAGGATTGAATTGAGGGGCGTGTGCTCGCCTCCTGAACCCCCTGCTTTCACTGTTGGGTTGGATGTTCCTCTGAATGAGTTGAAGGAGAGGTTGCTAAGGGACCAGGTTAGTGTCTCAGTGCTCACGGTCACCGGTTCAGGAGGTTCTGGGAAGTCTACATTAGCCAAAATGTTTTGTAAGGATGATCAAGTCAAAGGTAAATTCAAGGACAATATCTTCTTTGTCACCTTTGCGAAAACGCCCAAATTGAATACCATACTGCAGAAACTGTTTCAACACACTGGTTACCAAGTGCCTGAGTTTCAAAGTGATGAAGATGCGGTTAACCAATTGGAGCATTTGCTAAAAGACATTGGGAAAAAAGGCCCAATACTGTTGGTAGTAGATGATGTTTGGCCAGGATCAGAATCTCTTGTTGACAATTTTGTGTTAGAGATCCCAAACTACAAGATTTTGGTGACATCTAGATTTGCAATTGGAAGATTTGGTCCTCCATACGTCTTGAAACCCCTTGGGGAAGCAGATGCTGTAAATCTATTTCACCACTCAGCATCCCTGAAACAGAGCAGCACTGATATTCCTGATCATGTTGTCAAAGAGATAGTGAGAGGCTGCAGTGGTTCTCCCTTGGCACTTAGAGTGAGTGGCAGATCACTCAGTCACCAGCAGCCATTGGTTTGGCACAACAGGGCGAGGGCATTGTCCAAGGGTCATTCAATTCTTGATTCTAACAATGATGTACTTGTTTGTCTCCAAAAAAGCTTAGATGTATTGAATCCTAAGGCCATAGAGTGTTTTGGGGACCTAGGCTTATTTCCTGAAGACCAGAGGATCCCTGCTGCTGCCCTTGTTGATATGTGGAAAGTTGCAAGTGACACAGTTGAGTACAATTACCACTATGTCACATTGCATGGCCTTCTTCGGGAGCTAGCCATCCATCACACAAGCCAGGATCCAGTGGATAAGAGGAACAGACTAATTATTGACTTAAGTGGAAATAATCTTCCCACATGGTGGACTACAGAGAATGAGTATCACATTGCAGCCCGCATATTATCCATATCAACTGATGAAGCGTTCACTTCTGAATGGTGCAACTTGCAGCCAACTGAAGTTGAGGCACTAGTGTTGAACCTTCGAGAAAAGAAGTGCACATTACCAATGTTCATCAAGAAAATGAATAAACTAAAAGTTCTGATAATCACAAATTATGACCTTTATCCTGCAGACATAGAGAATTTCGAGCTGCTTGATCATCTATCTAATCTCAAACGAATCAGATTAGAGAACGTTTCAATTCCTCTGCTCAGCAAGACAGGGGTGCATTTGAAGAATCTGCGGAAGTGTTCTTTCTTTATGTGCAATGTGAATGAAGAATTTGAGAATTGCAATATCCAAGTTTCAGTTATGCTGCCAAACTTGGTGGAGATGAACTTTGACAATTGCAATATGGTGGAATTGCCAGTTGTGGTCTCTAATATTGTTTCCTTAAAGAGTCTGAACATTACAAACTGCCATAGGCTTTCTGCACTTCCTGAAGGAATTGGAAAGTTGGTCAATTTGGAATCACTGAGGCTTAGTTCCTGCAAGAGTTTACTAGAGTTGCCTCACTCAATTACAAGCCTTCTTAACCTAAAATTTCTCAACATCTCTGATTGCATAAGCCTTAAAGATTTACCTATGAATATTGGCAAGTTAGTTAAATTAGAAAGCTCAATGTCAGAGGTTGTTCGAGATTAA 2175 0.4161 MAMIVDAVLGHVVDELLTSVSEMKDKAVKFKPTLEQMEKTLKSIGPVVNQIEELNKRLDRSPEETDRLINHMRSGKELVLKCSKVQWWNCCYKANYQEELQALDEEIIRFFQIDMQGQNTRNGLEALVEIREFRAEFRNAVPRNERIELRGVCSPPEPPAFTVGLDVPLNELKERLLRDQVSVSVLTVTGSGGSGKSTLAKMFCKDDQVKGKFKDNIFFVTFAKTPKLNTILQKLFQHTGYQVPEFQSDEDAVNQLEHLLKDIGKKGPILLVVDDVWPGSESLVDNFVLEIPNYKILVTSRFAIGRFGPPYVLKPLGEADAVNLFHHSASLKQSSTDIPDHVVKEIVRGCSGSPLALRVSGRSLSHQQPLVWHNRARALSKGHSILDSNNDVLVCLQKSLDVLNPKAIECFGDLGLFPEDQRIPAAALVDMWKVASDTVEYNYHYVTLHGLLRELAIHHTSQDPVDKRNRLIIDLSGNNLPTWWTTENEYHIAARILSISTDEAFTSEWCNLQPTEVEALVLNLREKKCTLPMFIKKMNKLKVLIITNYDLYPADIENFELLDHLSNLKRIRLENVSIPLLSKTGVHLKNLRKCSFFMCNVNEEFENCNIQVSVMLPNLVEMNFDNCNMVELPVVVSNIVSLKSLNITNCHRLSALPEGIGKLVNLESLRLSSCKSLLELPHSITSLLNLKFLNISDCISLKDLPMNIGKLVKLESSMSEVVRD 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi25g00003 724 Gene3D Ribonuclease Inhibitor 469 720 IPR032675 -
Sebi25g00003 724 PRINTS Disease resistance protein signature 263 277 - -
Sebi25g00003 724 PRINTS Disease resistance protein signature 350 364 - -
Sebi25g00003 724 PRINTS Disease resistance protein signature 661 677 - -
Sebi25g00003 724 PRINTS Disease resistance protein signature 185 200 - -
Sebi25g00003 724 Gene3D - 395 466 IPR036388 -
Sebi25g00003 724 Pfam NB-ARC domain 169 368 IPR002182 GO:0043531
Sebi25g00003 724 SUPERFAMILY L domain-like 473 715 - -
Sebi25g00003 724 Gene3D - 148 305 IPR027417 -
Sebi25g00003 724 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 6 136 IPR008808 -
Sebi25g00003 724 Gene3D - 316 394 IPR042197 -
Sebi25g00003 724 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 715 IPR039203 GO:0050832
Sebi25g00003 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 413 IPR027417 -
Sebi25g00003 724 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi25g00003 Sebi-Chr25 95454 147817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi25g00003 163 705 WRKY Transcription Factor Family AT5G45050 21.517 1.66e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi25g00003 - - mtr:25502906 962.214