LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi259g00030	ATGAGGGGTGGTAGGAAAAGGAAGCTGCATTTAAGCAAGATCTACTCATTCACATGCTGCAAGGCATCTTTCAAAGGAGAACATTCACAGATTGGAGGTAGAGGTTATTCCAGGGTGGTCTTCTGCAATGAGCCAGATAACTTTGAGGCTGGGATTAGGAATTATGCAGATAATTCTGTCAGATCTACAAAATATACTGCTGCTACTTTCCTTCCTAAATCACTGTTTGAGCAGTTTAGGAGGGTGGCCAACTTCTATTTTTTGGTTACTGGTATTTTGGCATTCACAAAACTTGCTCCATATAAAGCTGTCAGTGCTATCCTTCCCCTGATTATTGTTATTGGGGCAACTATTGTGAAAGAAGGTATTGAAGACTGGCGTAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGCTAAAGTGCATAAAGTTGATGGCACTTTTGAATATACTGCATGGAAAAATCTGAGGGTGGGGAATATAGTGAAGGTAGAGAAGGATGAGTTCTTCCCAGCAGATCTCCTATTGCTTTCATCCAGTTATGAGGATGCAGTCTGCTATGCTGAGACCACGAACTTGGATGGGGAGACAAATTTAAAGTTAAAACAAGGTTTGGAGGTAACTTCATCCTTAAATGAGGATCTCAACTTCCGAAATTTTAGAGCTACAGTCAAATGTGAAGACCCAAATGCAAGTTTATACTCATTTGTTGGGAGCATGGAGTTTGAAGAGCAAAAATATGCCCTTTCTCCTCAACAACTTCTTCTACGAGACTCAAAACTTCGTAACACAGACTACATTTTTGGAGCTGTCATCTTCACTGGTCATGACACTAAGGTTATTCAAAATTCTACTGACCCACCTTCAAAGAGAAGCAGAATTGAGAAAAAGATGGATAGAATCATCTACTTCTTGTTTTGTATTTTATTTCTAATGGCATTTGTTGGATCTATCTTCTTTGGCGTTTCAACTAAAGATGACTTCGAAAATGGTTTGGTGAAAAGATGGTATTTAAGACCAGATGATTCTACAATCTTCTATGATCCGAAAAGATCAGCTGCTGCTGCTATGTTTCATTGTTTGACAGCCTTAATGTTATATGGCTTCTTTATTCCTATCTCTTTGTATGTGTCAATAGAAATTGTCAAAGTCCTTCAAAGCATTTTCATCAATCAAGATATCTATATGTACTACAAGGAAGCAGACAAACCAGCCCATGCTCGCACTTCAAACTTGAATGAGGAGCTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACTTGCAACTCAATGGAGTTCATCAAATGTTCTATCGCTGGGGTAGCTTATGGGCGTGGTGTTACAGAGGTTGAGAAGACCATGCATAGAAGAAAAGGCTCACCATTTGTTCATGAGCATGATATATCAGCAGAAGATGACATCAGGGATTCTCTTGATAAAAAAGCACTAATTAAAGGTTTTAACTTCACTGATGAAAGAATAACAAATGGAAATTGGGTTAATGAGCCTCATGCAGATGTTATCCAGAAGTTTTTTCGCCTATTAGCAGTATGTCATACAGCCATACCAGAAGTGGATAATGACACAGGAAATGTCTCATATGAGGCTGAATCCCCAGATGAAGCAGCATTTGTGATTGCCGCGAGAGAACTTGGTTTTGAATTCTGCAAAAGGGCTCAGACTAGTTTATCAACATGTGAGTTGGATCCAATATCTGGCAAGAAAGTTGAAAGGATGTACAAGCTTCTCAATGTATTAGAATTCAATAGCTCAAGGAAGCGAATGTCAGTGATAGTGGAAGATGAAGAAGGGAAAATTTTGCTACTCTGCAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGAATGGGAGGGAGTTTGAAGAGAAAACCATGGAGCATGTGCATGAGTATGCTGATGCAGGTCTTAGAACCCTTATACTGGCCTATCGTGAGCTTGATGCAGAAGAATACAAGGAGTTTGATAATAGATTCTCTAAGGCCAAGAATTTAGTTAGTGCAAATCAGGAAACACTGATTGAGGAGGTATCAGATAGTATTGAGAAAAATCTAATCCTTCTAGGTGCCACTGCTGTAGAAGACAAGCTCCAAAGTGGGGTTCCTGATTGCATTGACAAGCTTGCACAAGCAGGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCAATCAATGTTGGATTTGCTTGTAGCTTGCTCAGACAAGGAATGAAGCAAATTATAATTCATTTGGATAGTCAAGAAATTCAAGCACAAGAGAAGGATGGGGACAAGATAGCTATTGCCAAGGCATCAAGGCAAAGTGTCCTCCTTCAGATATCTGAAGGTGCTGCACAGCTTGCTGCATACAGAGGGAGCTCTAAGCAGGCATTTGCTCTGATTGTTGATGGCAAATCACTCGCTTATGCACTAGAAGATAATATGAAGAACATGTTTCTGGAGCTTGCAATTCGTTGTGCATCTGTTATTTGCTGTCGCTCATCACCAAAGCAGAAGGCACTG	2547	0.3997	MRGGRKRKLHLSKIYSFTCCKASFKGEHSQIGGRGYSRVVFCNEPDNFEAGIRNYADNSVRSTKYTAATFLPKSLFEQFRRVANFYFLVTGILAFTKLAPYKAVSAILPLIIVIGATIVKEGIEDWRRKKQDIEVNNRRAKVHKVDGTFEYTAWKNLRVGNIVKVEKDEFFPADLLLLSSSYEDAVCYAETTNLDGETNLKLKQGLEVTSSLNEDLNFRNFRATVKCEDPNASLYSFVGSMEFEEQKYALSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNSTDPPSKRSRIEKKMDRIIYFLFCILFLMAFVGSIFFGVSTKDDFENGLVKRWYLRPDDSTIFYDPKRSAAAAMFHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIYMYYKEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKTMHRRKGSPFVHEHDISAEDDIRDSLDKKALIKGFNFTDERITNGNWVNEPHADVIQKFFRLLAVCHTAIPEVDNDTGNVSYEAESPDEAAFVIAARELGFEFCKRAQTSLSTCELDPISGKKVERMYKLLNVLEFNSSRKRMSVIVEDEEGKILLLCKGADSVMFERLAKNGREFEEKTMEHVHEYADAGLRTLILAYRELDAEEYKEFDNRFSKAKNLVSANQETLIEEVSDSIEKNLILLGATAVEDKLQSGVPDCIDKLAQAGIKIWVLTGDKMETAINVGFACSLLRQGMKQIIIHLDSQEIQAQEKDGDKIAIAKASRQSVLLQISEGAAQLAAYRGSSKQAFALIVDGKSLAYALEDNMKNMFLELAIRCASVICCRSSPKQKAL	849

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi259g00030	849	ProSitePatterns	E1-E2 ATPases phosphorylation site.	426	432	IPR018303	-
	Sebi259g00030	849	Pfam	Phospholipid-translocating ATPase N-terminal	41	106	IPR032631	-
	Sebi259g00030	849	SUPERFAMILY	Calcium ATPase, transmembrane domain M	52	418	IPR023298	-
	Sebi259g00030	849	NCBIfam	phospholipid-translocating P-type ATPase	55	848	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0140326
	Sebi259g00030	849	Gene3D	-	479	703	IPR023299	GO:0000166
	Sebi259g00030	849	Gene3D	-	704	810	IPR023214	-
	Sebi259g00030	849	FunFam	Phospholipid-transporting ATPase	542	700	-	-
	Sebi259g00030	849	SUPERFAMILY	HAD-like	412	751	IPR036412	-
	Sebi259g00030	849	FunFam	Phospholipid-transporting ATPase	700	849	-	-
	Sebi259g00030	849	Gene3D	-	117	286	-	-
	Sebi259g00030	849	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	39	848	-	-
	Sebi259g00030	849	FunFam	Phospholipid-transporting ATPase	116	286	-	-
	Sebi259g00030	849	Pfam	Cation transport ATPase (P-type)	531	626	-	-
	Sebi259g00030	849	SUPERFAMILY	Calcium ATPase, transduction domain A	140	283	IPR008250	-
	Sebi259g00030	849	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	431	702	IPR023299	GO:0000166

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi259g00030	Sebi-Chr259	1121045	1132468	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi259g00030	3	849	Primary Pumps ATPases	AT1G68710	74.386	0.0	1324

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi259g00030	K01530		-	gmx:100792960	1504.19