Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi259g00020 ATGTATGAAGAAAGTGGTTGCTTTGATCCCAATGCAATGATGGGAACAACAACAGGCCCATCATCAGAAGACTGCTTCTCCCAAATCGTTTCAGAGTCAGACCAACCACTTCAGGCACCTGCCACGGAGACCCACAACAGCTTTTCAGAGAATGTGTGTCTTTCTGTGGAAAACTTCTCCTACCCATATTCTTGTGGTGAAGATGCTATTACTGCTACTTCTTCTACCCTCACAAATAGAGTTGCTGCTTCTGTTGCCACTGGAATGGAAATCACTGCACATCCCAACCAAATGGGTTTTCACATGGAAAATCCATACAATCATACCAATAACTTCAATACCAATTTGGTGGAAGAGGTCAATAACAATAACAATTGGGATACTTCAAAACTGCATAAGGTTTACCATAGTCAGCAACTTCCTTATCATCAACAAGATCAGCAGGATCAGCAATTTCCTTATCCCACAACAAAACCAGATCTTCTTAACCTTCTCCACTTGCCTAGAAGCCCACCTTCCCCATTTGGGAACTCCTCTCTATCTTTTGAAAACCCAAACCACAACACCACCAATCTTTCAAGACCCTCAAGCCATGCCACCTGGATTGGTAACTGCCCTATGGGGGCAGAAAGCACAAATGTTTCCTCTGTTACCTATGACCCTTTGCTGCATTTGAACTTGCAAGCACCACCACAAGGTGCTGCAATTCATCCTCTACCCCATGGCTACACCATGGCTTCAAGAAATGATTTTGTCTTTGGTGAAGGGGATGACATAGAAGGTAGTGGGGTTGCTTACCAAGATGGAGATGGGAGAGATTTTGGTAATGGAGTTTTAGAGTTCACCCAAGATGTGACTTATGTTGGTAAAAAGAGAGGAGGGAAAAGGGTCAAGCAATTTACCAGTACAAGTGAGAAACAAAGGAGAGTGGATTTGAGTAGCAAGTTTGATGCCTTAAAAGAACTCATCCCAAACCCTTCAAGGAGTGATAGAGCATCAGTGGTGGGAGATGCTATTGACTACATCAAAGAGCTTCTAAGGACAGTGAACGAGCTCAAATTATTGGCAGAGAAGAAAAGGCACGAGAAACAAAGGATGAACAGGCACAAGGTTGAAGAAGGTGGCTTGGAAGAAGACTACAACTTGAAGCTGGTTGGAATTGGCAACCCAGATGAACAATCCTACAATGAAAGCATTAGAAGTTCATGGATCCAAAGGAAATCTAAAGACACTGAGGTTGATCTGGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTTTATGCTCAATAGCAAGATATGTGAAGGTTCTTCAGTTTATGCAAGTGCCATAGCCAACAAACTTATTGAGGTAATGGACAGAAGTTTGGCAGCAGCATGA 1392 0.4325 MYEESGCFDPNAMMGTTTGPSSEDCFSQIVSESDQPLQAPATETHNSFSENVCLSVENFSYPYSCGEDAITATSSTLTNRVAASVATGMEITAHPNQMGFHMENPYNHTNNFNTNLVEEVNNNNNWDTSKLHKVYHSQQLPYHQQDQQDQQFPYPTTKPDLLNLLHLPRSPPSPFGNSSLSFENPNHNTTNLSRPSSHATWIGNCPMGAESTNVSSVTYDPLLHLNLQAPPQGAAIHPLPHGYTMASRNDFVFGEGDDIEGSGVAYQDGDGRDFGNGVLEFTQDVTYVGKKRGGKRVKQFTSTSEKQRRVDLSSKFDALKELIPNPSRSDRASVVGDAIDYIKELLRTVNELKLLAEKKRHEKQRMNRHKVEEGGLEEDYNLKLVGIGNPDEQSYNESIRSSWIQRKSKDTEVDLDLQHVAGGHIGDFCSFMLNSKICEGSSVYASAIANKLIEVMDRSLAAA 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi259g00020 463 SMART finulus 302 351 IPR011598 GO:0046983
Sebi259g00020 463 Coils Coil 342 369 - -
Sebi259g00020 463 Gene3D - 293 354 IPR036638 GO:0046983
Sebi259g00020 463 CDD bHLH_AtMYC1_like 301 361 IPR045896 -
Sebi259g00020 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Sebi259g00020 463 PANTHER TRANSCRIPTION FACTOR BHLH91 415 462 IPR045895 GO:0006355|GO:0048658
Sebi259g00020 463 Pfam Helix-loop-helix DNA-binding domain 303 345 IPR011598 GO:0046983
Sebi259g00020 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 365 IPR036638 GO:0046983
Sebi259g00020 463 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi259g00020 Sebi-Chr259 795359 797086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi259g00020 1 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 30.192 1.46e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi259g00020 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi259g00020 - - vra:106767981 394.43