Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi259g00017 ATGCAAGATGTAAAATGTAACATGACACGAGAGCTTCAATTAATTGCTGTCATGTCAGCACCGTCACCGTCTCCGGCGTCATCCGCCGCCGTGCCACCACCCAGTCCACCGCCACAGCTCTCTTCCCCTGCACCTGGCTGTTCAGCTTCACCACTACCATCTCTGTTCCCACCTCTCTTGTCACCTTCAACACCACCACCACTGCCAACTCCTGCTTCTCCTTCACTGCCACCACAGTCTCCGGTGCCGGAAAGTTCACCACCGGTATCACTGCCCCCTGAAAATTCACCCTCAGATGTGCCCCCTCTGAGGTCTTCTCCACCACCTGAATCAATCCCTCCTCAAAATTCCCCTCCTTCTCCTACACCTCTGAGTAGTGCACCACCACCACCTCCTAGGATAGGTCCTCCTTATTCTCAATATATCCCATCACCCACATTTAGATTGGCTCCACCACCTCCATCATCACAACATGCATCAGAAAATTCAAGCCCTGGAGGTGGTGGTGGCATTGGTTCTGGGGGTGCAGTAACTATTGGTGTAGTGGCTGGAGTTCTATTGCTTGGCTTCTTTGGCATTGCTATCTGGTGCCTGAGCAGGCAAAAGAAAAGGGTGTCTGAGAATGGTAGTTTTGTCTTGCCATCCTCTCATTTCCCATCACCTGAATCAGATTTGTCCCTTTTGAAGACACATTCTTCTGCACCTCTTATACAAAGAGGTTCTGGCAGTGATAATGTGTATAAACCATCAGGACCAGGCAACTCAAGGTCATGGTTTGCATATGATGAACTAATCAAGGCCACAAATGATTTTTCAACTGAAAACCTTTTGGGTGAGGGTGGATTTGGTTGTGTATATAAAGGATACCTTCCTGTTGGGAGAGAGGTAGCAGTCAAACAGTTGAAAATTGATGGAGGGGAAGATAGGCCAGTTTTAGACTGGGCAAACCGTGTTAAAATTGCTGCTGGTGCTGCTAGAGGAATAGCTTATCTCCATGAAGACTGGTCCTTTTGGAAACTTGAGTTTTTGAAGTTGGCTGAAAACATGACTGTCTCAGATTTTGGGCTGGCCAAATCAGCTCTTGATGCAAATACACATGTAACCACACGTGTAGTGGGGACTTTTGGATATGTTGCCCCAGAGTATGTATCAAGTGGAAAATTGACTGAGAAGTCAGATGTATATTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGACGGAAGCCAGTAGATATATCTCAACCAGTTGGAGAAGAGAGTCTAATAGAATGGGCTCGTCCTTTGCTAAGTCATGCACTTGATAATGAGGAATTTGAGAGTTTGATAGATCCAAAGCTAGGAAAGAACTATATTGATAGTGAAATAATTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCAACATTCAGCTACCAAAAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGTTTATCTACTTCAGACTTAACAAATGGAATGAGATTTGGGGAAAGTGAGGCGTTTGATTTGGCACAGCAATCCGCAGAAATAAGATTATTTCGTAGGATGGCATTTGGTTGTCAAGATTATAGCTCAGATATTTTTAGCCAGATTAGTTTGAATACCTAA 1617 0.4508 MQDVKCNMTRELQLIAVMSAPSPSPASSAAVPPPSPPPQLSSPAPGCSASPLPSLFPPLLSPSTPPPLPTPASPSLPPQSPVPESSPPVSLPPENSPSDVPPLRSSPPPESIPPQNSPPSPTPLSSAPPPPPRIGPPYSQYIPSPTFRLAPPPPSSQHASENSSPGGGGGIGSGGAVTIGVVAGVLLLGFFGIAIWCLSRQKKRVSENGSFVLPSSHFPSPESDLSLLKTHSSAPLIQRGSGSDNVYKPSGPGNSRSWFAYDELIKATNDFSTENLLGEGGFGCVYKGYLPVGREVAVKQLKIDGGEDRPVLDWANRVKIAAGAARGIAYLHEDWSFWKLEFLKLAENMTVSDFGLAKSALDANTHVTTRVVGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDISQPVGEESLIEWARPLLSHALDNEEFESLIDPKLGKNYIDSEIICMIEVAAACVQHSATKRPRMGQVVRAFDSLSTSDLTNGMRFGESEAFDLAQQSAEIRLFRRMAFGCQDYSSDIFSQISLNT 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi259g00017 538 Gene3D Transferase(Phosphotransferase) domain 1 306 502 - -
Sebi259g00017 538 MobiDBLite consensus disorder prediction 153 167 - -
Sebi259g00017 538 SUPERFAMILY Protein kinase-like (PK-like) 248 482 IPR011009 -
Sebi259g00017 538 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Sebi259g00017 538 Pfam Protein tyrosine and serine/threonine kinase 312 483 IPR001245 GO:0004672|GO:0006468
Sebi259g00017 538 ProSiteProfiles Protein kinase domain profile. 163 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi259g00017 538 MobiDBLite consensus disorder prediction 26 139 - -
Sebi259g00017 538 PRINTS Proline rich extensin signature 70 87 - -
Sebi259g00017 538 PRINTS Proline rich extensin signature 88 113 - -
Sebi259g00017 538 PRINTS Proline rich extensin signature 25 46 - -
Sebi259g00017 538 PRINTS Proline rich extensin signature 51 67 - -
Sebi259g00017 538 FunFam proline-rich receptor-like protein kinase PERK8 297 498 - -
Sebi259g00017 538 Gene3D Transferase(Phosphotransferase) domain 1 244 305 - -
Sebi259g00017 538 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 185 307 IPR047117 -
Sebi259g00017 538 MobiDBLite consensus disorder prediction 17 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi259g00017 Sebi-Chr259 770054 774379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi259g00017 151 533 Trihelix Transcription Factor Family AT5G38560 50.219 5.12e-138 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Sebi259g00017 PK_Tyr_Ser-Thr 4.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi259g00017 - - gmx:100812440 514.998