Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi259g00005 ATGTCAACACTTAACCATCATTTTGATCTTTCTGAACAGATATGTTACGTGCAATGTGGATTCTGTACCACCATATTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAACTGTGGTGACAGTCAGATGTGGCCATTGCACAAGCCTCCTCTCTGTCAATATGATGAAAGCTTCCTTTATCCCTTTCCACCTTTTAGCTTCCCTTAGTCATTTTGAGCCAAAAGAGGGTAGTTCAGAAGAGGATGCAAACATGACTTTGAACAGCCATAATGCAACCATGATGACCTATTCTGATTTTGAGGAAGAGAACGTTATTCAAATGACCAATGTGGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTCAAAACCCAGACATGACCCACAAGGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCCTATTTCCCCCCATCTCAGTGTAAAGGAGACCAAGACAGCTGTAGCCACACAGAGCAAGTTGAGGATTTGGACTCCCATGTAAAGCCTCATGATGCTGAGGTCAATGAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGTTCCAAGGAATTCCATCTTGGCAAGGACACCGTTTCAGTGA 648 0.4336 MSTLNHHFDLSEQICYVQCGFCTTILMVSVPCSSLSTVVTVRCGHCTSLLSVNMMKASFIPFHLLASLSHFEPKEGSSEEDANMTLNSHNATMMTYSDFEEENVIQMTNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAQNPDMTHKEAFSTAAKNWAYFPPSQCKGDQDSCSHTEQVEDLDSHVKPHDAEVNEEGQGFRGRKVPRNSILARTPFQ 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi259g00005 215 FunFam Axial regulator YABBY 4 107 175 - -
Sebi259g00005 215 MobiDBLite consensus disorder prediction 171 200 - -
Sebi259g00005 215 Gene3D High mobility group box domain 110 176 IPR036910 -
Sebi259g00005 215 Pfam YABBY protein 10 162 IPR006780 GO:0007275
Sebi259g00005 215 SUPERFAMILY HMG-box 108 163 IPR036910 -
Sebi259g00005 215 CDD HMG-box_SF 120 156 - -
Sebi259g00005 215 PANTHER PROTEIN YABBY 6-RELATED 1 176 IPR006780 GO:0007275
Sebi259g00005 215 MobiDBLite consensus disorder prediction 167 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi259g00005 Sebi-Chr259 250135 252397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi259g00005 2 215 C2C2-YABBY Transcription Factor Family AT1G23420 58.333 2.28e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sebi259g00005 YABBY 3.9e-63 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi259g00005 K25796 - gmx:100804172 352.058