Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi258g00083 ATGGAGATGAAAAATTTAGGTGTTGCTAGTATCAGTAGTTCAAAGTCGTCCTATTTGGAAAGAAGTGGTAAGTTAAAACCCAGAATGGGATTCTCATCCAAGGAACCATTTCCTGGAGGCAGAGGTTCAAATAATGATGATGTTACGAATAAAGACTACAGTGTTTTGGATGCAACAGTTGCATGGAAAACTGATGGAAGTTGCAGCATGACAATGTCTCCCGGGTTTGAGGAATGGAAAAATAAGAAGCTTGGTCAATCCCTAAAAGATAGTTGCAACAGGTCAGTCAGGAGTAGCAGGAGCCGGAGCCCTCCACATGGTTTTATGTGGGATTCAGGAGTCATTGACAAAAATAGAGCAAGTGCTGGACGATTAACACAACCATGTAGAGATTTTGCGGCTGGGAAATGCAGAAGAGGCAGCCATTGTCATTTCCTTCACCTTGGTAATCAAAATTTTGAGGATAGTTGGGAAAGTAGACACAGACAAGATGGAGCTCCCAGATATTCTGCTGCCCATGAGAGTGGGGACTATTGTCTTACAAGTGGAAGATCTGATGAAGCTTGTATTAATTTTTTGAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTATGTGCATCATGATAATTCTGATGGGTTTGGTAAAGTTTCTGCGGATGAATCATCTAGGGATCGGGTAATTAATAGAAGGCACATGGAGAACTCTTTCGAGCAGGGTGGTTGGCGTTATCCAAACCACATTGGTACTCCTTGCAAATTTTTTGCTTTTGGGAATTGTCGTAATGGTAAACATTGTAGGTTTTCTCATGATAGACAAGCATGTAGGAGCCCTAATAGAAGATTAAGCGATGATAGGACAAGGATTAATCAAGGTGGAGATCAGGTATTGGATAGACCAAAATTGAGTGATTCTGATACTCCTAATCGAAGGATAAGAGATGATAGATGGTGTTCAGATGGCAGTATAGCTGCTGTAGATAAAGTTTGGGATGGTCCAAACAAGAATCATTTAGTTGCTGTCTTTGATACTGCAAAACTGGTTGAGGACAACAAAAATGGAGTTATGAGCTTCACTGCTTGGCCAATGAGTGATGGGTGGGGCCATAACTTAGACAAGAACAGAGTGCATGGTGAGTCGCCATTTTCAAGTTATAAGAAGGAAGCCAACTGTTGGACAGCAGAAAATGCAATTGACAACATTCGCATTTCCCAGTCAGTAGATAGAAGCATTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTACGGTGAGCGATCTTCCAGCCGTATTAAAGAAGAGCACAGGCAGAATAAGCAACAAGTTTCTCCAGGACAAGGATATAATCATGCTGCTCGAAATGTAAATGCTTTGCATTCTTCAAGCTATCATGGTGTTGTACAGAGTCATGTGTTGCATTCAATTGCTCTTCCAAGACTAAGAACTGAAGGTATGCAGAACCAGGAAGTCTCTACTGAGAAAAGGTATACTGTTGAGTCAATTGCAAGCCTATCACAAGTTGGTTCAAGAAATCATCCAACTCACAACATGGTTAGCAAAGAACAGCTTGCTCAACTTACCTGCCTCTCAGCTTCTCTGGCACATTTCCTTGGAGCAGGTAGGCAGCTCCTGCAACTTAATACATCTTCAAGCTCTCATGATACAAAGGGCGTGCCCTCTGTAGACCAAACTGAAGGGTCTGGTGATCCAATGTCTGATAGTATGGAGACAAGTGGGGTCCCCCAAACCTTTTCACCTATTGAAAATGTTCCAAACGATGCAGTAGAAATTCCATCACTGTTATCTAACTCGGGACAAAATTTTGATGATTTTTGTAAGACTGCATTTTCATCAGAACTTGTCAAGAGTGAAAATGAAATGACAGCTGAAGAGAATGATCCTTTGGAAGACATGGACAAAAGTGGTGGATCTGATGAGGCCAACAAAATAAAGGATGTGAAGGGGATTCGTGCATTTAAATTTTCATTAGTGGAGTACATTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGATAAAGTAACTGGTTCAGTGCAGCGGGAACATATTCCTCAGACACAAGACAAAATTGACCACTATTTATCATTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCATACGTGGAAAAGGTTCGGAAGGCGTAG 2217 0.4114 MEMKNLGVASISSSKSSYLERSGKLKPRMGFSSKEPFPGGRGSNNDDVTNKDYSVLDATVAWKTDGSCSMTMSPGFEEWKNKKLGQSLKDSCNRSVRSSRSRSPPHGFMWDSGVIDKNRASAGRLTQPCRDFAAGKCRRGSHCHFLHLGNQNFEDSWESRHRQDGAPRYSAAHESGDYCLTSGRSDEACINFLKGRCRMGASCKYVHHDNSDGFGKVSADESSRDRVINRRHMENSFEQGGWRYPNHIGTPCKFFAFGNCRNGKHCRFSHDRQACRSPNRRLSDDRTRINQGGDQVLDRPKLSDSDTPNRRIRDDRWCSDGSIAAVDKVWDGPNKNHLVAVFDTAKLVEDNKNGVMSFTAWPMSDGWGHNLDKNRVHGESPFSSYKKEANCWTAENAIDNIRISQSVDRSIWPGDEKMSPDWNYGERSSSRIKEEHRQNKQQVSPGQGYNHAARNVNALHSSSYHGVVQSHVLHSIALPRLRTEGMQNQEVSTEKRYTVESIASLSQVGSRNHPTHNMVSKEQLAQLTCLSASLAHFLGAGRQLLQLNTSSSSHDTKGVPSVDQTEGSGDPMSDSMETSGVPQTFSPIENVPNDAVEIPSLLSNSGQNFDDFCKTAFSSELVKSENEMTAEENDPLEDMDKSGGSDEANKIKDVKGIRAFKFSLVEYIKELLKPTWKEGQITKEDYKAIVKKVTDKVTGSVQREHIPQTQDKIDHYLSFSKPKLNKLVQAYVEKVRKA 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi258g00083 738 MobiDBLite consensus disorder prediction 299 313 - -
Sebi258g00083 738 ProSiteProfiles Zinc finger C3H1-type profile. 183 210 IPR000571 GO:0046872
Sebi258g00083 738 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Sebi258g00083 738 SMART c3hfinal6 247 272 IPR000571 GO:0046872
Sebi258g00083 738 SMART c3hfinal6 183 209 IPR000571 GO:0046872
Sebi258g00083 738 Pfam RNA-binding, Nab2-type zinc finger 188 207 - -
Sebi258g00083 738 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 147 IPR000571 GO:0046872
Sebi258g00083 738 Gene3D - 245 307 - -
Sebi258g00083 738 MobiDBLite consensus disorder prediction 625 647 - -
Sebi258g00083 738 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 12 736 - -
Sebi258g00083 738 Pfam CCCH-type zinc finger 251 271 IPR041367 -
Sebi258g00083 738 ProSiteProfiles Zinc finger C3H1-type profile. 123 150 IPR000571 GO:0046872
Sebi258g00083 738 MobiDBLite consensus disorder prediction 277 313 - -
Sebi258g00083 738 MobiDBLite consensus disorder prediction 550 590 - -
Sebi258g00083 738 MobiDBLite consensus disorder prediction 412 448 - -
Sebi258g00083 738 SUPERFAMILY CCCH zinc finger 248 271 IPR036855 GO:0046872
Sebi258g00083 738 MobiDBLite consensus disorder prediction 90 113 - -
Sebi258g00083 738 MobiDBLite consensus disorder prediction 1 50 - -
Sebi258g00083 738 Gene3D - 119 219 - -
Sebi258g00083 738 MobiDBLite consensus disorder prediction 624 647 - -
Sebi258g00083 738 ProSiteProfiles Zinc finger C3H1-type profile. 251 273 IPR000571 GO:0046872
Sebi258g00083 738 MobiDBLite consensus disorder prediction 277 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi258g00083 Sebi-Chr258 1181941 1187829 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi258g00083 zf-CCCH 0.0001 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi258g00083 - K22909 gmx:100783856 846.269