Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi258g00075 ATGGCCAAAACGAGATTGATTCCGGGATTTCGGTTCCATCCCACTGACGTTGAGTTGGTTATGTACTTTCTAAAGAGGAAAGTGATGGGGAAAAAGTTAATTGATAATGTCATTGCTGAACTTGACATTTACCAGTATGCTCCTTGGGATCTACCAGATAAATCTTGTCTGAGAAATGGGGATTTGGAATGGTACTTCTTGTGCCCGATAAAGAAGAAATATGGCAGTGGAACCAGGATGAATCGAGCTACAGAAATTGGGTATTGGAAAATTACTGGGAAGGATAGATCTGTTCAACACAATAATCATACTGTGGGGATGATCAAATCCCTGATATTTCACACCGGCAAAGCACCTCTTGGGGAACGAACGGATTGGGTTATGTATGAGTACAGGCTTGATGATAAGGACCTGACTGACAAAGGATTTGCTCAGGATTCCTATGTAATCTGTAAGGTATTTCAAAAGAAAGGTCGTGGTCCCATGAATGGTGCACAATATGGTAGACCTTTTAATGAGGAAGACTGGAATGATGAAGAAGCAGGGATACCTTTTGCTGATTCATCTGCTGCACCATTTCCCATTTTGCCTATGGCATCTAATTGTCCCCTTCCAAATGAGCAGCACCTGCCTTCTAGTGCATGTATTGGGTCAACATCCACATCATGTCTATCAGGATTGATTCCTTCTCCTGGTCCAGAAATTCCTTCACATCCAAGCAATCAAACTGTTAACAATGATGATGATATTTTATCAATGCTTGACATTTTCAAAGAAGACATGCCTGAGATTGACAATCATGGTCAGGAAAATGTTGCTGAAGGTGCACCTTCAAATGATTTTTTTGAGGGCTTGGGAGACCTGGATTACTGGGCTGCGTTCGGTGGTTTCTCCTCTGGCCAGAATGCTGAAGTTAGCACAAATGGAATGGCTACGCTGGGTGATGAAGTGTGGTTTGGCGACTTGGAATTCTTGGAGTTGATTGACCTAGACTCTCCATTGTTCTGA 1008 0.4246 MAKTRLIPGFRFHPTDVELVMYFLKRKVMGKKLIDNVIAELDIYQYAPWDLPDKSCLRNGDLEWYFLCPIKKKYGSGTRMNRATEIGYWKITGKDRSVQHNNHTVGMIKSLIFHTGKAPLGERTDWVMYEYRLDDKDLTDKGFAQDSYVICKVFQKKGRGPMNGAQYGRPFNEEDWNDEEAGIPFADSSAAPFPILPMASNCPLPNEQHLPSSACIGSTSTSCLSGLIPSPGPEIPSHPSNQTVNNDDDILSMLDIFKEDMPEIDNHGQENVAEGAPSNDFFEGLGDLDYWAAFGGFSSGQNAEVSTNGMATLGDEVWFGDLEFLELIDLDSPLF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi258g00075 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 220 - -
Sebi258g00075 335 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Sebi258g00075 335 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Sebi258g00075 335 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Sebi258g00075 335 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi258g00075 Sebi-Chr258 1056785 1059425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi258g00075 1 334 NAC Transcription Factor Family AT5G09330 44.628 1.18e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi258g00075 NAM 6.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi258g00075 - - gmx:100778933 426.787