Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi258g00049 ATGGCAACTTCCAGAAATGGCTCTTTATGTGAGAAAGAATGGTACTTTTTCTCGCCAAGGGACCGAAAATATCCAAACGGTTCAAGACCGAACCGGGCGGCCGGAACCGGATATTGGAAGGCCACGGGAGCGGATAAACCGATCGGAAAACCGAAGCCACTTGGGATTAAGAAGGCACTTGTGTTCTATGCAGGGAAAGCCCCTAAAGGAGTGAAAACCAATTGGATTATGCATGAGTATCGTCTTGCCAACGTTGATAGATCTGCCTCTAAGAAAACAATAACTTAA 288 0.4618 MATSRNGSLCEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKPLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKTIT 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi258g00049 95 Gene3D NAC domain 2 94 IPR036093 GO:0003677|GO:0006355
Sebi258g00049 95 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 84 - -
Sebi258g00049 95 ProSiteProfiles NAC domain profile. 1 95 IPR003441 GO:0003677|GO:0006355
Sebi258g00049 95 Pfam No apical meristem (NAM) protein 9 82 IPR003441 GO:0003677|GO:0006355
Sebi258g00049 95 SUPERFAMILY NAC domain 11 84 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi258g00049 Sebi-Chr258 703998 704495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi258g00049 11 90 NAC Transcription Factor Family AT5G08790 97.500 2.16e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi258g00049 NAM 7.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi258g00049 - - egr:104415985 164.081