Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi258g00046 ATGGGCAAAGAAAATGTGTCACCAATGGCAAAGGAAGAAGTCAGTGATGATGGTTCCTCAAGCGTTGAGACTGGGGACTTAGAATCTCATCCTCGACTTAGTCTGGAGAAGGAGACAGGCTTGGCAAGTTGTCGTGTGTGCCAGTGTGCTGAGTCTGATAAAAGGGGAGATGCTGCACTAGAATTTTTGGGCATCACTCCTGTTATAGAGTCTGATGGCAAGGGGGTTCAAAAAGATATGTCTCTTCATAAAAATATTGAAAACAAATCTGGGGTGGTGGAATTTGTAGGCCCTGATGGGGAGGTTTTCATTTGTAAAAATGATTTGGAAATTGGTTTGTCTCATCAAGATGCATTGCTTGAACTTGGTTGTTGTTGTAAAAATGACCTTGCTTTAGTGCATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCGAATAATATCAGAGTATCTGACTTCAATAAGGTCGTTGGTTCTTTGAAGGAGTATGAAGCATTGAGGGAAAGAACTGCCACTGGGGATCCTGGTCCTGCTCAAGCTAATGCAAATAATGGGGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGACTAAGTGAAATAGCACTATGGTTTTGTCCTCATAATAGCAGTAACATTACCAACAATAGCAATGTGGATACAGTTTCACTGGTTGTCTCTGAGCAGCCTTTGAATATTGTTCCTGAAGATGCTGGCCCTGAACAGAATCCTGCAACTAAATGGGCAGTAGAAGGTACTGGGATCCTGCTAGCTACAGGCCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGCTAAGGAAAAGTATGTCACTTGTTTTCGAAATGCAAGGCGGTTTAGATTCCTTTGGAACAATCTTTTGTGAGCTTTGTGGAGCATTGGATATGCGCCTCTACTCTAAAAGGCTAGAACAATTTAGGATGGTTAACCATAAATTTGTGAGATTGGAGCATAATGCCTGTATGTTTAAGGGTGATTCTGGCCCTGAAACTTGGTTGGTGGTCTACGCATTTCTACTTCAAAAGAGTTATCACTTTGGATGGGAAAAGTGA 1125 0.4267 MGKENVSPMAKEEVSDDGSSSVETGDLESHPRLSLEKETGLASCRVCQCAESDKRGDAALEFLGITPVIESDGKGVQKDMSLHKNIENKSGVVEFVGPDGEVFICKNDLEIGLSHQDALLELGCCCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGSLKEYEALRERTATGDPGPAQANANNGVDPDAVAAIRRQRLSEIALWFCPHNSSNITNNSNVDTVSLVVSEQPLNIVPEDAGPEQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKLRKSMSLVFEMQGGLDSFGTIFCELCGALDMRLYSKRLEQFRMVNHKFVRLEHNACMFKGDSGPETWLVVYAFLLQKSYHFGWEK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi258g00046 374 PANTHER ZINC FINGER, RING-CH-TYPE 15 283 - -
Sebi258g00046 374 SUPERFAMILY RING/U-box 115 156 - -
Sebi258g00046 374 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Sebi258g00046 374 SMART ringv_2 104 154 IPR011016 GO:0008270
Sebi258g00046 374 MobiDBLite consensus disorder prediction 1 34 - -
Sebi258g00046 374 Pfam RING-variant domain 117 153 IPR011016 GO:0008270
Sebi258g00046 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi258g00046 Sebi-Chr258 684795 687158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi258g00046 1 304 C3H Transcription Factor Family AT5G08750 59.683 1.45e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi258g00046 - - gmx:100805323 421.779