Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi258g00021 ATGGCGAAATCAAGTTCAACCACGGTAACATTCAAACCAGCATGGGTTCTTCCGTACCGTACACAGCACATAACAGAGGTAACAGGTGGTAGGTACGCTTGCAAGTCTATTCCGAAACGGAAGCTTCTGTGCAAGGAGGATTACGACGACGTTTGGAGGGAGATTCAGATAATGCACCACTTATCTGAACACCCTCACGTGGTGCGAATCGAAGGAACCTATGAGGATTCCTCTGCTGTTCATCTGGTTATGGAGCTCTGTGAAGGAGGAGAGTTATTTGACAGGATCGTGCAGAAAGGTCACTACAGTGAGAGACAAGCTGCGAAGTTGATAAAGACTATTGTTGAGGTTGTGGAGTCTTGTCACTCTCTTGGTGTGATGCATAGAGACCTTAAGCCTGAGAATTTCCTCTTTGATACTGTTGATGAGGATGCTAAGCTTAAAGCTACCGATTTTGGTTTGTCTGTTTTTTATAAGCCTGGTGAATCCTTTTGTGATGTTGTTGGGAGCCCATATTATGTTGCACCAGAGGTATTGCGCAAGCTCTATGGACATGAATCAGATGTGTGGAGTGCCGGGGTTATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCCGAAACTGAACCAGGGATATTCCGACAGATTTTACTTGGAAAACTTGATTTTCAGTCTGAGCCTTGGCCTAGTATTTCTGACAGCGCAAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCTGATAAACCTCTTGATTCTGCGGTTTTATCACGTCTGAAACAATTCTCTGCAATGAATAAACTAAAAAAGATGGCTTTGCGTGTTATTGCTGAGAGGCTATCTGAGGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACAGACAGCAGTGGAAGCATAACATTTGATGAGTTAAAAGATGGCTTGAAGCGAGTAGGATCTGAGCTTATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCGGATATTGATAACAGTGGGACAATTGACTATGGTGAATTCATTGCTGCCACTGTTCATCTAAATAAGCTTGAGAGAGAGGAAAACCTGTTGTCAGCCTTCTCCTATTTTGACAAAGATGGTAGTGGTTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGACTTTGGTTTAGACGATGTCCACATTGATGAAATGATCAAGGAAATTGATCAAGATAACATTATATGCCAGCACAGTTATGTGTCTGTAGGTGCCAACTTATTCATTAATGGAAGGTTTATGGCGCAGGATGGACAAATAGATTATGGGGAATTTGCTGCTATGATGAGAAAGGGCAATGGAGGGATAGGAAGGCGAACTATGAGAAAGACACTAAATTTAAGAGATGCTCTGCAATTAGTAGGCCATTGA 1479 0.4226 MAKSSSTTVTFKPAWVLPYRTQHITEVTGGRYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEHPHVVRIEGTYEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAAKLIKTIVEVVESCHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGHESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGSITFDELKDGLKRVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKDFGLDDVHIDEMIKEIDQDNIICQHSYVSVGANLFINGRFMAQDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNLRDALQLVGH 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi258g00021 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Sebi258g00021 492 ProSitePatterns EF-hand calcium-binding domain. 356 368 IPR018247 -
Sebi258g00021 492 FunFam Calcium-dependent protein kinase SK5 92 276 - -
Sebi258g00021 492 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 429 - -
Sebi258g00021 492 CDD EFh 384 466 IPR002048 GO:0005509
Sebi258g00021 492 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Sebi258g00021 492 ProSiteProfiles EF-hand calcium-binding domain profile. 307 342 IPR002048 GO:0005509
Sebi258g00021 492 SUPERFAMILY EF-hand 303 467 IPR011992 -
Sebi258g00021 492 Gene3D - 377 492 - -
Sebi258g00021 492 Gene3D Transferase(Phosphotransferase) domain 1 93 304 - -
Sebi258g00021 492 ProSiteProfiles EF-hand calcium-binding domain profile. 343 378 IPR002048 GO:0005509
Sebi258g00021 492 SMART efh_1 383 411 IPR002048 GO:0005509
Sebi258g00021 492 SMART efh_1 347 375 IPR002048 GO:0005509
Sebi258g00021 492 SMART efh_1 417 468 IPR002048 GO:0005509
Sebi258g00021 492 SMART efh_1 311 339 IPR002048 GO:0005509
Sebi258g00021 492 SUPERFAMILY Protein kinase-like (PK-like) 27 276 IPR011009 -
Sebi258g00021 492 Gene3D - 305 376 - -
Sebi258g00021 492 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi258g00021 492 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Sebi258g00021 492 CDD STKc_CAMK 28 263 - -
Sebi258g00021 492 FunFam Calcium-dependent protein kinase 1 272 439 - -
Sebi258g00021 492 Pfam Protein kinase domain 26 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi258g00021 492 CDD EFh 312 371 IPR002048 GO:0005509
Sebi258g00021 492 Pfam EF-hand domain pair 324 374 IPR002048 GO:0005509
Sebi258g00021 492 ProSitePatterns EF-hand calcium-binding domain. 320 332 IPR018247 -
Sebi258g00021 492 Gene3D Phosphorylase Kinase; domain 1 21 92 - -
Sebi258g00021 492 Pfam EF-hand domain 384 411 IPR002048 GO:0005509
Sebi258g00021 492 SMART serkin_6 19 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi258g00021 Sebi-Chr258 233706 237874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi258g00021 28 486 EF-hand Containing Proteins AT1G35670 76.087 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi258g00021 Pkinase 2.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi258g00021 K13412 - gmx:100806678 862.062