Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi258g00006 ATGGATCCGGACCCATTCACCTCCAACCTATTCAAGTGGGACCCACGACCCGTCCTTCCAACTGTCCCTCCTGCCACCCGGCTCCCTCTTCTCGAATACACCATGCCTCCGCCGAGGGAGCTTCAAGCGGCCGGGCTGGAGGAGCTGTTCCACGCTTACGGCGTCAGGTACTTCACGGCGAACACCCTGGTGGACATGAAGGATGAGGAGATTGACGACATGATGAACAACCTCTCCCAGATTTTTCGCTGGGATCTCCTCGTCGGTGAACGATACGGCATCAAAGCTGCCATTAGAGCCGAGAGAAGACGCATTCACGGCCATGACATGAGGCGTCGCAACCCTCTCTCCGCCGACACAACTAACGCACTTGATGCTCTCTCTCAAGAAGGTGCATGCGCTTCTCAATTTCAAATAGCTAACACACAAACCCTGTTAGTTAATTTTAACCCTTCATGA 459 0.5403 MDPDPFTSNLFKWDPRPVLPTVPPATRLPLLEYTMPPPRELQAAGLEELFHAYGVRYFTANTLVDMKDEEIDDMMNNLSQIFRWDLLVGERYGIKAAIRAERRRIHGHDMRRRNPLSADTTNALDALSQEGACASQFQIANTQTLLVNFNPS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi258g00006 152 Pfam Floricaula / Leafy protein SAM domain 43 106 IPR035079 -
Sebi258g00006 152 PANTHER PROTEIN LEAFY 1 137 IPR002910 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi258g00006 Sebi-Chr258 60862 61320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi258g00006 1 130 Orphan Transcription Factor Family AT5G61850 48.026 1.99e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Sebi258g00006 SAM_LFY 6.6e-31 CL0003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi258g00006 - - gmx:100798196 169.859