Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi258g00001 AGGAATGTTGGATTGCAGAAGCCAAAATACATTAATGATCAACACCCACAAGGAAAGAATGGAATGATAGCATCACCTGGCAGTATCATGAATGCTCCATCACCCCTTGAAGTAAATGCAAATTCTGGCTTGTCGATGTCTCAGACTAGTCTATCTGGGGAAAGTACAGTAAAGCTATATTTTGGTGGAGAAGAAGGCGTTGTCGATGTGTTGAAGGATTCCAAGGAGTCATCGCATTATCACCCCAAATCATGGTCTGATGCGTGTATGCCGTCAGCACCTACCTCATATGGTTTAATTGGGAAGAAGATTGTCACTTGTGCTGCCCCTTGTGAAAGTAGTCTATTCTCAAGCTCACTATCTGAGATATTTATCCAAAATTTGAGGTTATTTGGAAATGATGTTCTGTCTGAAGAGCCCATTACTGTTGATTACCTTCCTGAGGATGAACCATATAAATCTCTTGAGGAGATGGAGGCTGACACTATAGGGAAACTCCTTCCTGATGACGATGATCTGTTTTCTGGTGTTGTTGATGAGCTAGGATACAATTCTCATACCAAAACAAATGATGACTTGGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGGATGGAGCTGGAAGGAGATGAACATTTATGTTCAGGAAAAAGAACAAATAGTCTGGTTGGAGATTCTGGTTTCTTTGGAGGATCTAAAGGAAAACTTTCTTTTGGTGAACAGCCTTCTAGAACACTTCTTGTTAGAAACATCAATAGTAATGTAGAAGACTCAGAGCTAAGGGCTCTTTTTGAGCAATATGGAGATATCCAAACCATTTATACAGCCTGTAAACATCGTGGGTTTGTTATGATTTCCTATTATGACACAAGGGAAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTTAAGCATATTTTTGGATTTTATGGAGAAATTAAAGAGATCTATAAATATCCCGAAATGAGTCATCACAAATTTATAGAGTTTTATGATGTGAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGATTGAAATTGCTGGGAAGCAGATTAAGCTTGAACCTGGCCATCCTAGTCTGATGCAGCGGTCTCACAAGGGGCGAGATGAACGAGATCTTGGCCATGGTATTGTTGACAACTTTTCATTGAGACAAAAGTTGTCTTCTGGAGTAGTTGGATCTGGCTGCTTGGAAAATGGATATAATCAGAGATTTCAATCTGCAATGCGGCAACCTTTGAATGCATTTATTGATAATGCATTCTTTCATGCAAATTCTAGCATTCACAACAGTATGAGAGGGTCGTTTGCTGGAAATGTGTCTAGCGTTTCTGAGTCCAGTAACTTTGTTGATAGAATGAAACTTGCATCTAGTCCAAGTTTTCATCCTCATTCTTTGCCAGAGTTTCATGGTAGTTTAGCTAATGGTAGCCCTTATAACTTTTCAAGCACCAATAGCAACATGGCTAGAAATATAGGTACTGGAGGAACAGAAGCTACTGATGGCAGGCATATTCAGGGTATGAGCTCAACTGGAAACTTAGCAGAATTTAATGGAGGAGGAAATGGGATCCGCCCGCATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCATCAGCAACCTTCATCAAGTACCATGCTTTGGAAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTCCATGCCTTCCGCAGAGGCCTAGTGCTTGTGCTCCATGCCTTCCGCAGAGGCCTAGCTTTGCTAGAACACCACCTCATATGCTGAGAACACATGTGGATCATCCTGTTGGATCAGCACCAGTTGTTGCATCCCTGCCCTGGGAAAAGAAAAATTCTTACTTGGGAGAGTCCCCTGAGGCTTCTGGTTTTCACTTGGATTCTCTAGGAAGTGGAGGGTTTCATGGTTCCTGGCAATTGCATCCACTGGATTTTTCTTCTGACATGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACAGCTAATGCTGCACAGAGCTCTCCTAAGCAGTTGTCACATGTTCTCTCTGGGACACATCCTATGACTTTAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAGCCTTTATCATCGTAGAAGTGAAGCAAACACCAACAATGTTGATAAAAAACAATATGAACTTGACTTGGGTCGCATAATGCGAGGGGAAGACATCCGAACAACCCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTAAGGGAACATATGACTTTCTGTACTTACCAATCGACTTCAAGGCAAATGGCCCAAATGCCGGTGATCCGGAGCCTTTTCCGGTGGGCGCCAATATTATATTGAGACCTGGAAAATCTCGCACCGCTGGCAATGAGGGGAATCCTTCAACTTTGGCGAGCGGAGAAGAGTCTGCTAATGGAATAGATTCTTGA 2589 0.4164 RNVGLQKPKYINDQHPQGKNGMIASPGSIMNAPSPLEVNANSGLSMSQTSLSGESTVKLYFGGEEGVVDVLKDSKESSHYHPKSWSDACMPSAPTSYGLIGKKIVTCAAPCESSLFSSSLSEIFIQNLRLFGNDVLSEEPITVDYLPEDEPYKSLEEMEADTIGKLLPDDDDLFSGVVDELGYNSHTKTNDDLEDFDLFSSGGGMELEGDEHLCSGKRTNSLVGDSGFFGGSKGKLSFGEQPSRTLLVRNINSNVEDSELRALFEQYGDIQTIYTACKHRGFVMISYYDTREAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKHIFGFYGEIKEIYKYPEMSHHKFIEFYDVRAAEAALRALNRIEIAGKQIKLEPGHPSLMQRSHKGRDERDLGHGIVDNFSLRQKLSSGVVGSGCLENGYNQRFQSAMRQPLNAFIDNAFFHANSSIHNSMRGSFAGNVSSVSESSNFVDRMKLASSPSFHPHSLPEFHGSLANGSPYNFSSTNSNMARNIGTGGTEATDGRHIQGMSSTGNLAEFNGGGNGIRPHHGLYHMWNSSNLHQQPSSSTMLWKKTPSFVNGACAPCLPQRPSACAPCLPQRPSFARTPPHMLRTHVDHPVGSAPVVASLPWEKKNSYLGESPEASGFHLDSLGSGGFHGSWQLHPLDFSSDMFSHVGGNGTELTANAAQSSPKQLSHVLSGTHPMTLMSKFDSTNERMRSLYHRRSEANTNNVDKKQYELDLGRIMRGEDIRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKANGPNAGDPEPFPVGANIILRPGKSRTAGNEGNPSTLASGEESANGIDS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi258g00001 862 Gene3D - 327 419 IPR012677 -
Sebi258g00001 862 MobiDBLite consensus disorder prediction 841 862 - -
Sebi258g00001 862 FunFam Protein MEI2-like 1 328 418 - -
Sebi258g00001 862 SMART rrm1_1 245 313 IPR000504 GO:0003723
Sebi258g00001 862 SMART rrm1_1 330 398 IPR000504 GO:0003723
Sebi258g00001 862 FunFam MEI2-like protein 5 isoform 2 233 327 - -
Sebi258g00001 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 402 IPR000504 GO:0003723
Sebi258g00001 862 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 317 IPR000504 GO:0003723
Sebi258g00001 862 Gene3D - 236 326 IPR012677 -
Sebi258g00001 862 SUPERFAMILY RNA-binding domain, RBD 241 400 IPR035979 GO:0003676
Sebi258g00001 862 MobiDBLite consensus disorder prediction 835 862 - -
Sebi258g00001 862 CDD RRM1_MEI2_like 243 318 IPR034453 -
Sebi258g00001 862 PANTHER RNA RECOGNITION MOTIF-CONTAINING 86 822 - -
Sebi258g00001 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 396 IPR000504 GO:0003723
Sebi258g00001 862 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 310 IPR000504 GO:0003723
Sebi258g00001 862 Pfam RNA recognition motif 2 774 815 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi258g00001 Sebi-Chr258 29 6519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi258g00001 242 414 Eukaryotic Initiation Factors Gene Family AT1G71770 25.275 1.03e-08 57.0