Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi257g00022 ATGGATGAGTTTTTTGATGCTTCATGTGTTAACCTAGATGACGATAATGGTGATATTTATGGTAATAGTGATGGGTTTGATGTAAATAACAGTGAAGATAATAATGAATTGGGTGGTCCTAATGTGGTGGAAGAGTTAGGTAACATAGATCATAATAATAAAAGAATAGAAGATATGTCTCCTGATGACATACGAAGCATGGAGTTTGCTAGTGAAGAGCATGGTGGTTTATTTTATCAAGCTTACGCAAAGCGTCATGGTTTTGTTGTTAGGAAAGATGAGGTATGTCGTGATATTAAGGACAATGTTATCATGCGTCAGTTTGTTTGCAACAAAGAGGGGACTAGGAGCAAAAAACATCTCATGAGGGTTGATAGGAAAAAAGACCACAGGCCAATTACACGTGTGCGGTGTCAAGCCAAGCTACGAATTCGCTTAGATTACAAGACAGGGTTGAATGATGCTGATAAAGCTCAAGTAGATAGGTTGCACGCATATGGTGTTAGGACATGCCACATAATGGGGAAGGACTTGTATAATTATATTGAACGACAGAAGCTTGAAAAGATCAAAGATGGGGATGCACATGCTGCCTTATGCTACATACAGGCAAAGGCAAACAATGATCCCACTCTTCGGTCGAGTTTCGTTGCTTCAGAAGATGAATTCCTCCGTGCTATGTCAGATAAACATCCAGCTGCAGTAGTTACAGATGGGGATAATAGTATGAGAGAAGCTATCAAGCAGGCAGCCATGTATTCTAATTTCACCGTGGATCAATTTGAGTTGTTTTGGAAGCGAATGGTTGCAAAGCATGGTCTTATGGGAAACAAGTGGGTTTCAAAAACCTATGAAAATAGGTTTGAGCAAGTTTTGAGAGAATATAGGAATAATGAGATGATTGCAGATTTCAAGTCTCTATTTACGGAGCCAGTCTTAACAACTTCTCTCAAGGAAAATGAGAGAGAGGCTTCAAAAATATTCACATTAGAGATTTTTAGAGAAGTGAAATCTGAGATTGAGGTTGCAGGTGCTTTGAATGTAAATGAACGTCTGGAACATGGAGATAAACTGAATTTTAAGTTGAACCATTATTGTAATCGTGGCAGTCAATTTGAGGTTGAGTATGATGTTGTGAATTCAAAATTTTTGTGTGAGTGTAGACTGTTTGAGAGTCGAGGAATACCTTGTTCTCATATTATATGTGTCCTAAAAAATGAGAGCATGCAATCCATGCCGAGTAGTTTGATTGTTAAGCGATGGACAAAGAAATGCAAGAGCGATCTTATTTCTATATATCAAGCAGATGATGTGGATAATGATGTCATGAAAGAAGCGCGTTTAGGGGCTGTTGGTGGAGCGTTTCAAAGGTTGGGTTGCATTGCAAAAGAAAAGAAAGAGTACTTCAATGATATAATAAATGATGTTTTGAAGCTAGTTCAGAAATATGAGAGAATCGGGGAACCACATGGCACACAAACCTCACGTGAGAAGATTGTCAAGGATCCACCAGTGGTCAAAACTAAAGGAGCATCACCTAAAAGAAAGTATGGAAGGAAGAGGAAAAGGTGCTCAAATTGCAATAGAACTGGGCACATACTCAAAAGATGTCCTAACCTTTATGGTAGGACTGAGGAGAAGATGGATGAGGACAAATCACCTTTAGGACAGGATGAGGATAGAGAAGGCACTCCATTAGATGAAGTCAATGGTCATGGCATGGAGCCTAGTAATCAGACTCAGAGAGTAAACCATAATGAAGTTAATGTGAAAATTAGTGACAGTCGCAAAGGGAAGGAGAAGCAATGCACTCAAGAAGTTGAAGTCAAAGTGAGTGGTATTAATGAAGGGAAGGAGAAGGAATGCACACAAGAAGTAACAGTCAAATTGAGTGGTACTCGTGAGGTGAAGGGAAAGGAGGTACAGGTGATGTCACAAAAATCATACCCCATCACTGTGAGTACAACTAGGATGTGTGAAACCCACCCAACAAAAGAAATCCAGGGATTGAACGGTTTAAATATTGAAACTTTGATGTTATCTTGA 2046 0.392 MDEFFDASCVNLDDDNGDIYGNSDGFDVNNSEDNNELGGPNVVEELGNIDHNNKRIEDMSPDDIRSMEFASEEHGGLFYQAYAKRHGFVVRKDEVCRDIKDNVIMRQFVCNKEGTRSKKHLMRVDRKKDHRPITRVRCQAKLRIRLDYKTGLNDADKAQVDRLHAYGVRTCHIMGKDLYNYIERQKLEKIKDGDAHAALCYIQAKANNDPTLRSSFVASEDEFLRAMSDKHPAAVVTDGDNSMREAIKQAAMYSNFTVDQFELFWKRMVAKHGLMGNKWVSKTYENRFEQVLREYRNNEMIADFKSLFTEPVLTTSLKENEREASKIFTLEIFREVKSEIEVAGALNVNERLEHGDKLNFKLNHYCNRGSQFEVEYDVVNSKFLCECRLFESRGIPCSHIICVLKNESMQSMPSSLIVKRWTKKCKSDLISIYQADDVDNDVMKEARLGAVGGAFQRLGCIAKEKKEYFNDIINDVLKLVQKYERIGEPHGTQTSREKIVKDPPVVKTKGASPKRKYGRKRKRCSNCNRTGHILKRCPNLYGRTEEKMDEDKSPLGQDEDREGTPLDEVNGHGMEPSNQTQRVNHNEVNVKISDSRKGKEKQCTQEVEVKVSGINEGKEKECTQEVTVKLSGTREVKGKEVQVMSQKSYPITVSTTRMCETHPTKEIQGLNGLNIETLMLS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi257g00022 681 ProSiteProfiles Zinc finger SWIM-type profile. 372 408 IPR007527 GO:0008270
Sebi257g00022 681 ProSiteProfiles Zinc finger CCHC-type profile. 523 539 IPR001878 GO:0003676|GO:0008270
Sebi257g00022 681 SMART c2hcfinal6 523 539 IPR001878 GO:0003676|GO:0008270
Sebi257g00022 681 MobiDBLite consensus disorder prediction 542 584 - -
Sebi257g00022 681 MobiDBLite consensus disorder prediction 542 568 - -
Sebi257g00022 681 SUPERFAMILY Retrovirus zinc finger-like domains 512 545 IPR036875 GO:0003676|GO:0008270
Sebi257g00022 681 PANTHER OS01G0519700 PROTEIN 252 530 - -
Sebi257g00022 681 Pfam FAR1 DNA-binding domain 78 148 IPR004330 -
Sebi257g00022 681 SMART 26again6 383 410 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi257g00022 Sebi-Chr257 335768 339395 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi257g00022 FAR1 4.5e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi257g00022 - - ccaj:109792835 324.709