Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi257g00012 ATGGGTCGTGGAAGAATACCCATGGAACTCATTCAGAAGGAAAAAGCTCGTAAGGCAACGTTTCTAAAGAGAAAGAATGGCTTGATGAAGAAAGTTTACGAGTTTTCCACTCTTTGTGGAGTTGATGTTTGTCTAATTATTTATGGCCCCAACTTTGATAACCAAAAACTAGTTGAACCTGAAACATGGCCCCAAGACACAAGAGAGGTATACCGTATAATTCAAAAATATTTTGACACCACTAGTGATAGATGTCCAAAGATCTATGGTGTGCAAGAGTATTATCAAGATAGAATGAAAAAGGTTGAAGGTGAGATTTCAAAAATATGCAAAGACAAGCTCAAAATAATGTACCCAACTTGGGATGATTCTTTCAATCCTCTTGGAGAGGAGCAACTAAGGATTTTTGTTAGCTTATTGGATGCAAAGTTTGATGCTTGTAGTCAAAGGATGAATATGCTAAAAGGGAATCACAAGGGAAAAGCAATAGCTGAATCAGATAATATGGTTATGACACTTAGTCCCTACTTAGCCTCAAATTCAAGTAGCTACCTCAATCTCATGCAGAACATTGTTCAACCACAATTTTTCCCTCCCCTTTCAATTAGTGATATTGATAACATTCCATTTCAGCTTGGTGAGAGTTCTCAACCTTCCATGCTTCATTTTGGCCAAAATTATATGCAATTGATGGGGAAAAATGGAATGGTGATGGATTGGGCTGATCAAATTGGTAATGACAACAAAATGGTATGCTAA 759 0.3702 MGRGRIPMELIQKEKARKATFLKRKNGLMKKVYEFSTLCGVDVCLIIYGPNFDNQKLVEPETWPQDTREVYRIIQKYFDTTSDRCPKIYGVQEYYQDRMKKVEGEISKICKDKLKIMYPTWDDSFNPLGEEQLRIFVSLLDAKFDACSQRMNMLKGNHKGKAIAESDNMVMTLSPYLASNSSSYLNLMQNIVQPQFFPPLSISDIDNIPFQLGESSQPSMLHFGQNYMQLMGKNGMVMDWADQIGNDNKMVC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi257g00012 252 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Sebi257g00012 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi257g00012 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Sebi257g00012 252 CDD MADS 2 51 - -
Sebi257g00012 252 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Sebi257g00012 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi257g00012 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 150 - -
Sebi257g00012 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi257g00012 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi257g00012 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi257g00012 Sebi-Chr257 187187 187945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi257g00012 1 150 Type I MADS-box Gene Family AT5G55690 40.397 4.27e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi257g00012 SRF-TF 8.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi257g00012 - - ccaj:109800518 302.753