Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi257g00003 ATGCACCAGGAAGCCCAACGGGTGGGAGTCACGAGAGTGGGGGAGACCAGAGCCCGCGTGGTTCTTCGTCTGGTGCGAGGGAACAAGACCGTTACCTACCCATTGCCACATCAGCCGGATCATGAAGAAGGCCTTGCCGGCGAATGGGAAGATTGCAAAGGATGCCAAGGACACAATGCAGGAATGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAGTGGAGATGATTTGCTATGGGCAATGGCCACTTTAGGATTTGAAGACTACATAGAACCGCTTAAGGTGTACCTAGCAAGGTACAGAGAGCTGGAGGGTGACACTAAAGGATCTGCTAGAAGTGGTGATGGATCTGGTAGACGAGATCAAGTTGGCCTAGCAGGTCAAAATGCTCAGGTGTGA 408 0.5123 MHQEAQRVGVTRVGETRARVVLRLVRGNKTVTYPLPHQPDHEEGLAGEWEDCKGCQGHNAGMASEKCQKEKRKTISGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDTKGSARSGDGSGRRDQVGLAGQNAQV 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi257g00003 135 MobiDBLite consensus disorder prediction 109 135 - -
Sebi257g00003 135 Gene3D Histone, subunit A 56 135 IPR009072 GO:0046982
Sebi257g00003 135 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Sebi257g00003 135 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Sebi257g00003 135 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 62 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sebi257g00003 135 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 84 IPR003958 -
Sebi257g00003 135 SUPERFAMILY Histone-fold 61 123 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi257g00003 Sebi-Chr257 88410 89973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi257g00003 63 135 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.603 1.07e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi257g00003 CBFD_NFYB_HMF 2.2e-05 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi257g00003 K08065 - gmx:100815883 133.265