Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi256g00044 ATGGCTTTAGTTTACGATCTCATCAAGAACATCTTCCTTGGAAGAAAAGGGTGCATTCCACGTTTTGGGTTCACATTCACTGATTCCGCTGGGTTGCTCGATACAGATGAGCAGAGTGATTTCCTAATTGACACCATAGGTCTCTTGACAGTTGTTTCATCAGAGAAGAGGTCAATCCGTGATGGTAGGATGACACGTGTCATTCAACTTGAGCTGACTGATGACAAGGACTACGTTGACATCATTAATGAGCAATTGAATGCCACTGGGGCTGAGTTACCTGTGGTCATTATTCAGTTGGCCAAGGTCAAACGATTTCGCGGTGAAATTATGCTCCAGAATGTGCTGACGACCACTAGGATCTTATTTAATCCAGAGACGTCAGAGGTGGAAGAGTTTAAAAACGGCGTTGTGCGACATGGCATAGACTTGTTTGCCCCCATGAGAACTATTGAGGAAAATATTGCTCAGATACATCCATACGAGGAATTAATGCGGAGGTATCCTAGGAAGACCATATCAGAATTGCATAACACGTATGAGGATGGCATATTTATAGTGCTTGCGTCTGTTGTTAATATTCTTGGCAATGGCCAATGGTGGTACGAGGCATGCAAGTGCAATAGGGTCGTGACTATGGAGGGGGACATGTACTATTGTCCGTCATGTGACATGCTTGCCAAAGAAGCCATGTACAGGTATAAGATAAATCTGGAGGTTTTTTATGGTGATGAAACGACGTCACTTATCATGTTTGACTTTGATTCTCAACAGTTGTTGGGTATTCCATGTGCTGATCTAGTTGCTAAGATGAAGGTGGAAAACGGGTTGGACTCAGTTCCTGACAAATTTGATGCCCTGTCCGGAAAGGAAATGCTTTTCATGATTGAAAAGTTGGCTGACTATTCCTACAGATTGGATGAGACCTACAAGGTTAAGAGGGTGTGTGAAGATGAAGATATTATTGCGGCCTTTAAGAATGAGGTTGATATTGCAACTCCTAACAATGTAAGACACACTGCTAGCCAATCAAGAGATCAAGTTGTTGCGCCACGTGATCAGTCTGTGCTGACTGAGACTCAGCTATCAACTGTTGCATCAGAGGGCGATCCGAGGATGTAA 1122 0.434 MALVYDLIKNIFLGRKGCIPRFGFTFTDSAGLLDTDEQSDFLIDTIGLLTVVSSEKRSIRDGRMTRVIQLELTDDKDYVDIINEQLNATGAELPVVIIQLAKVKRFRGEIMLQNVLTTTRILFNPETSEVEEFKNGVVRHGIDLFAPMRTIEENIAQIHPYEELMRRYPRKTISELHNTYEDGIFIVLASVVNILGNGQWWYEACKCNRVVTMEGDMYYCPSCDMLAKEAMYRYKINLEVFYGDETTSLIMFDFDSQQLLGIPCADLVAKMKVENGLDSVPDKFDALSGKEMLFMIEKLADYSYRLDETYKVKRVCEDEDIIAAFKNEVDIATPNNVRHTASQSRDQVVAPRDQSVLTETQLSTVASEGDPRM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi256g00044 373 CDD RPA1_DBD_C 171 315 IPR047192 -
Sebi256g00044 373 CDD RPA1_DBD_B_like 44 134 - -
Sebi256g00044 373 Pfam Replication factor-A C terminal domain 186 298 IPR013955 -
Sebi256g00044 373 SUPERFAMILY Nucleic acid-binding proteins 35 135 IPR012340 -
Sebi256g00044 373 Gene3D - 19 141 IPR012340 -
Sebi256g00044 373 Gene3D - 161 325 IPR012340 -
Sebi256g00044 373 SUPERFAMILY Nucleic acid-binding proteins 168 297 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi256g00044 Sebi-Chr256 804533 807047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi256g00044 19 267 Core DNA Replication Machinery Family AT4G19130 23.843 1.16e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi256g00044 - - lja:Lj1g3v3385890.1 273.478