LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi256g00012	ATGGGACTCTGTCATGGAAGACCCATTGAAACCTCACACACAGAAGGAGAAAACTCAGTTTTCCCAAGTAACAAACAGGTATTGTCACTACCACCAAGTTCCCACACCACCAAATCACCATCAAAGTTTCCATTTTTCAGCCCTAGTCCCTTGCCAAACCTCTTCAAGAACTCACCAGCGAACTCTAGTGTGAGCTCAACCCCTCTGCGCATCTTCAAACGCCCCTTTCCTCCTCCTTCGCCGGCCAAGCACATTCGGGCCTTGCTGGCCCGGCGCCATGGCTCAGTGAAGCCCAATGAGGCCACCATCCCTGAAGGGAGTGAGTGTGAGGTTGGGTTGGACAAGAGTTTTGGGTTCTCAAAGCACTTCACGGCTCATTATGAGCTTGGACAAGAAGTGGGGCGTGGCCATTTTGGATACACTTGCTCTGCCAAGGGAAAGAAAAGCAGTTTCAAGGGCCATGATGTTGCTGTCAAAGTCATTCCAAAATCCAAGTTGATTATGAAAATCAATGATGTGGTCTTTGTTCTTATGAATTTGGGCAATGTTTGGCAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTCTAACTGGGCATAAGAATTTGGTGCAGTTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGCGAACTGCTAGATAAGATTCTTTCCCGGGGTGGAAAGTACTCAGAAGAGGATGCCAGAGTTGTTTTGATTCAGATATTAAGTGTGGTAGCTTATTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCGGAGAATTTTCTTTTCTCTTCTGAAGATGAGAATTCCACGCTGAAGGCCATTGATTTTGGACTGTCTGACTATGTAAAGCCAGAGGAGAGGTTGAATGATATTGTTGGAAGTGCATATTATGTTGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCGTATATTCTTTTATGTGGAAGCCGACCTTTTTGGGCCAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCACCTGATGCAAAAGATTTTGTAAAGAGGCTGTTGAATAAGGATTTTCGTAAAAGACTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGGCGAATCACTGTGATGATATGAGGATACCATTTGATATGATAATCCACAAGCTTGTTAAAACTTACATATGCTCATCTTCTTTACGCAAATCAGCGTTGGGGGCTCTTGCAAAGACATTAACATTAGTGCAGTTAGCATATCTTAGAGAACAATTTACTCTGTTAGGGCCAAACAAAAATGGGCTAATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACTGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTGAACATGGTTGGTTCAATCCAATATCGGAAATTAGATTTCGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAAGGAATGGACAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGCTGTTTGAAAAGGATGGAAATAGGCCAATCATGATTGAAGAGCTTGCCTCGGAACTTGGGCTTAGCCCATCAGTACCTATTCATGTGGTACTCCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGACTTCTGCACGGAGTTTCTTCGCGTACATTTCAGAAGGCTTGA	1806	0.4391	MGLCHGRPIETSHTEGENSVFPSNKQVLSLPPSSHTTKSPSKFPFFSPSPLPNLFKNSPANSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEVGLDKSFGFSKHFTAHYELGQEVGRGHFGYTCSAKGKKSSFKGHDVAVKVIPKSKLIMKINDVVFVLMNLGNVWQMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDKILSRGGKYSEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFSSEDENSTLKAIDFGLSDYVKPEERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSPDAKDFVKRLLNKDFRKRLTAAQALSHPWLANHCDDMRIPFDMIIHKLVKTYICSSSLRKSALGALAKTLTLVQLAYLREQFTLLGPNKNGLISMQNFKTAILRSATDASKDSRVLDYVNMVGSIQYRKLDFEEFCAAAISVHQLEGMDSWEQHARRAYELFEKDGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi256g00012	601	FunFam	CDPK-related kinase 1	187	235	-	-
	Sebi256g00012	601	Gene3D	Transferase(Phosphotransferase) domain 1	237	429	-	-
	Sebi256g00012	601	FunFam	CDPK-related kinase 3	119	311	-	-
	Sebi256g00012	601	SMART	serkin_6	127	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi256g00012	601	FunFam	CDPK-related kinase 1	421	593	-	-
	Sebi256g00012	601	PANTHER	SERINE/THREONINE-PROTEIN KINASE	113	577	-	-
	Sebi256g00012	601	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	271	283	IPR008271	GO:0004672\|GO:0006468
	Sebi256g00012	601	SUPERFAMILY	Protein kinase-like (PK-like)	116	439	IPR011009	-
	Sebi256g00012	601	ProSitePatterns	Protein kinases ATP-binding region signature.	133	159	IPR017441	GO:0005524
	Sebi256g00012	601	SUPERFAMILY	EF-hand	439	592	IPR011992	-
	Sebi256g00012	601	Gene3D	Phosphorylase Kinase; domain 1	120	236	-	-
	Sebi256g00012	601	MobiDBLite	consensus disorder prediction	13	42	-	-
	Sebi256g00012	601	ProSiteProfiles	Protein kinase domain profile.	127	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi256g00012	601	MobiDBLite	consensus disorder prediction	1	42	-	-
	Sebi256g00012	601	FunFam	Calcium-dependent protein kinase SK5	319	414	-	-
	Sebi256g00012	601	CDD	STKc_CAMK	126	408	-	-
	Sebi256g00012	601	Gene3D	-	430	592	-	-
	Sebi256g00012	601	Pfam	Protein kinase domain	127	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi256g00012	Sebi-Chr256	235760	240259	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi256g00012	1	599	EF-hand Containing Proteins	AT3G50530	63.902	0.0	831

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Sebi256g00012		Pkinase	1.5e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi256g00012	K13412		-	gmx:100803625	1022.69