Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi256g00003 ATGGCTCCCAATTCGCCTTCAAGAAAAGAGTTCAATCCCACAGACGATCAACTCCTCCGATTGTTCCTCTACAACAAGGTCCACGGGAAACCTTTCCCCAGCAATAACCCTTGGGAGATTTGGCAACAATTTGGAGATGGTTCCCACTCATACAACGGTGGAAAGGATCTCTATTTCTTCACCACACTAAAGAAAAAGTCTCCATCTAGGACCTCACGTAGTCGACGCTCGGTTCGCACCATTGGCTGTGGTTCTTGGGAAGGTGAAGACACAGGCAAAATCATAGTGGCCAGTGGCACCAACCAACTCCTCGGTATCAAGAAACGGTATCGTTTTGAGAAGAGTGGCACTGACCACGATGGTGGGTGGATCTTGCATGAATACAGCCTTGGCCCATCTATGCTAAGCAATCCTCATGCAATTAATTGGGTTCTATGCAGATTTAGAAAGAATTTGAAAAATGAGAGTAGCGTCACAAGACAAAGGAAAACCATTGTTCTTGCACTTGCTTCTGCTACCGCTGAATCTGAGAATAATAATGTTCGGCTGGGGGAAGATATTTTCCTCCGAGGACCAAGAAACCATCTAGAGAGTGGAGTTAACAGAACCAAGGTGGTTGAAACTACCAGTACTAAAAGCAAGTCTGAATATAAGGAAGAGGATGGTAATGTCACTATGTTTGGGCCGGAGTCATTTTCCATGGAGTTGAGAGAGTTTGAAGGATGTTTGATCCAAGAGGAAGACATCCCCTTACTTCCTAATCCATTTTACTTGGACCTATTGTTGGAAATGATTGATATTAAGTACATCAAAAGTAGTAGTAAGTAG 828 0.4384 MAPNSPSRKEFNPTDDQLLRLFLYNKVHGKPFPSNNPWEIWQQFGDGSHSYNGGKDLYFFTTLKKKSPSRTSRSRRSVRTIGCGSWEGEDTGKIIVASGTNQLLGIKKRYRFEKSGTDHDGGWILHEYSLGPSMLSNPHAINWVLCRFRKNLKNESSVTRQRKTIVLALASATAESENNNVRLGEDIFLRGPRNHLESGVNRTKVVETTSTKSKSEYKEEDGNVTMFGPESFSMELREFEGCLIQEEDIPLLPNPFYLDLLLEMIDIKYIKSSSK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi256g00003 275 SUPERFAMILY NAC domain 10 149 IPR036093 GO:0003677|GO:0006355
Sebi256g00003 275 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Sebi256g00003 275 Gene3D NAC domain 14 156 IPR036093 GO:0003677|GO:0006355
Sebi256g00003 275 Pfam No apical meristem (NAM) protein 10 130 IPR003441 GO:0003677|GO:0006355
Sebi256g00003 275 PANTHER NAC TRANSCRIPTION FACTOR 56 10 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi256g00003 Sebi-Chr256 27772 30466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi256g00003 11 148 NAC Transcription Factor Family AT5G13180 32.278 6.84e-15 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi256g00003 NAM 5.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi256g00003 - - mtr:11433340 225.328