Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi255g00097 ATGGAGATTCACTACAGCCAAAGTTACTTCGAAAGGCGCCCCATTCTCAAGTCAAAGGCTCCCGCTGTTAAATGGGTTAAAAAATGGTCGAGCATTATTGCTGGCAGGGTTCCCCAAGATCTCGTAACAACTGGGGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACCTTAAAGGCCTTGAAAGAAAAGGAAAAGGAGATACCAGTTCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCCCACATCCATGGAGAGAGGCAATATGTTTGTCACTATGAAGGATGTGGAAAGAAATTTCTAGACAGCTCAAAGTTGAAAAGGCATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTTATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGCGGAAAGAGATTTGCGCATGAATACAAGCTAAAGAATCACATGGCATCTCATCATGAAAAGGTTGGGCAGTGTTTCCTGTACCTGAATGCATCAGTTGAGGTGATCAAGTACACTCCACCTTCGGATAAGCAAACAAAAACTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCGCCCCTATGCATGTCCTTATGAAGGATGTGAAAAAGCTTACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCGGGGCATATGGCTGATGAAAATGCTGAGCATGCTCAGGTTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGTGGGAAATGGTCAAATGGTAAAACTCAGAAGCAAAGTAGGCCCAAACCAAACCTCAAGTTGCCTCATTCCAAAATTGCAAAACGCAAAGGGTCCACAGCCACTCTAACTGTAATTAACAAACCTTTGCCTGTGAAAGATGAAACCTTTGATGAAGAAGATAGCGAAGAAACAGAAGAAGATCGGAATAATGTTGAGGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGA 1155 0.4312 MEIHYSQSYFERRPILKSKAPAVKWVKKWSSIIAGRVPQDLVTTGGKCMLLRWVTEDTLKALKEKEKEIPVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPYEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHMASHHEKVGQCFLYLNASVEVIKYTPPSDKQTKTKPSGGAYGSASSDRPYACPYEGCEKAYIHEYKLRLHLKREHPGHMADENAEHAQVNADNEMDEASDQDAYGGKWSNGKTQKQSRPKPNLKLPHSKIAKRKGSTATLTVINKPLPVKDETFDEEDSEETEEDRNNVEDGWRYAGGNNEDDDEETEYED 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi255g00097 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 273 IPR013087 -
Sebi255g00097 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 172 IPR013087 -
Sebi255g00097 384 FunFam zinc finger transcription factor YY1 84 109 - -
Sebi255g00097 384 MobiDBLite consensus disorder prediction 219 234 - -
Sebi255g00097 384 SUPERFAMILY beta-beta-alpha zinc fingers 124 176 IPR036236 -
Sebi255g00097 384 FunFam Putative zinc finger protein 143 110 140 - -
Sebi255g00097 384 ProSitePatterns Zinc finger C2H2 type domain signature. 115 137 IPR013087 -
Sebi255g00097 384 SUPERFAMILY beta-beta-alpha zinc fingers 238 266 IPR036236 -
Sebi255g00097 384 FunFam Zinc finger transcription factor YY1 219 285 - -
Sebi255g00097 384 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 24 322 - -
Sebi255g00097 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 142 IPR013087 -
Sebi255g00097 384 MobiDBLite consensus disorder prediction 299 314 - -
Sebi255g00097 384 Gene3D Classic Zinc Finger 110 141 - -
Sebi255g00097 384 Gene3D Classic Zinc Finger 142 170 - -
Sebi255g00097 384 Gene3D Classic Zinc Finger 171 198 - -
Sebi255g00097 384 ProSitePatterns Zinc finger C2H2 type domain signature. 245 268 IPR013087 -
Sebi255g00097 384 Gene3D Classic Zinc Finger 219 286 - -
Sebi255g00097 384 Pfam Zinc finger, C2H2 type 143 167 IPR013087 -
Sebi255g00097 384 Pfam Zinc finger, C2H2 type 173 197 IPR013087 -
Sebi255g00097 384 SUPERFAMILY beta-beta-alpha zinc fingers 87 137 IPR036236 -
Sebi255g00097 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 113 IPR013087 -
Sebi255g00097 384 ProSitePatterns Zinc finger C2H2 type domain signature. 86 108 IPR013087 -
Sebi255g00097 384 FunFam Zinc finger protein 410 141 168 - -
Sebi255g00097 384 MobiDBLite consensus disorder prediction 287 384 - -
Sebi255g00097 384 ProSitePatterns Zinc finger C2H2 type domain signature. 145 167 IPR013087 -
Sebi255g00097 384 Gene3D Classic Zinc Finger 84 109 - -
Sebi255g00097 384 SUPERFAMILY beta-beta-alpha zinc fingers 167 199 IPR036236 -
Sebi255g00097 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 197 IPR013087 -
Sebi255g00097 384 SMART c2h2final6 243 268 IPR013087 -
Sebi255g00097 384 SMART c2h2final6 113 137 IPR013087 -
Sebi255g00097 384 SMART c2h2final6 84 108 IPR013087 -
Sebi255g00097 384 SMART c2h2final6 173 197 IPR013087 -
Sebi255g00097 384 SMART c2h2final6 143 167 IPR013087 -
Sebi255g00097 384 MobiDBLite consensus disorder prediction 219 240 - -
Sebi255g00097 384 FunFam zinc finger transcription factor YY1 170 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi255g00097 Sebi-Chr255 1064343 1069338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi255g00097 7 369 C2H2 Transcription Factor Family AT4G06634 63.185 4.47e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi255g00097 zf-C2H2 0.0014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi255g00097 - - gmx:100811480 623.624