Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi255g00088 ATGGCTTCAGATCCAGTTTCAGCAGCACCCTCTTCATCAACCAACCAATCTATATGTCCAGTGTCCATGAATTATGTCTTAACTGTCTCTTGGAACCACTCTACCTGCCTTAACTTCCAACCTTTGCCATCCAAACAAGACACAAGCACAACCACTTGTTGCAAAACTTTGTTGAATCTCTTTGGTATAGCACTTGCAGATAACCTCAAGAAAACCTCTCTTTTCCATCTCCCTAACATCTCTACCTCTATCTCATGCCTTGAGGATTACCAATCAAAGCTCACTTCTCTTTTACTTCCCAATAACCTTGTTTCCTCTTGCTTTGATCCACTTCAATTTGTTATTAGCCCCAATATTTGTGCTAATATTCAAACTAAGCAAGATTGGATCAATAGGGTTGGTCCCTCAAATACAGCACTTGACACTGCTTGTGAACCAGACCTCACTGATTTTGCCCGTTGCCAATATTGTGTGAATGAAGGGTACAATGTTCAGCAGATGGTGGCACGTATTGATGGGCTAATTTGGTTCAAGTTTGAGGACCTTGTGAAGGCTACCAACAATTTTTCACCTCAGAACTTTATTGGCAGAGGTGGGTCTGGGTCAGTTTACAAGGGGATTCTACCTGATGGTAAAATGGTTGCTGTTAAAAGGATTGAAGAATCAGATTATCAAGGAGATGCTGAGTTTTATAGAGAGGTGGGGATTGTTAGTAGCTTGAAGCACCGCAATTTGGTGCCACTAAGAGGGTGTTGTGTGGTTGTTGAGCATGAGAGTGCTGAGTACACAGGAAGAGATATCAAAGCCACCAATATACTACTTGATGCTGATGAAAGTTCTACTAGAAACATAATGGAGAGGTTTTTACTGGTTGGAATTCTGTCTTCTCATGTAATTGCTGCTTCAAGGCCAACAATTTTGGATGCTTTGAGGATGTTAGAAGGGGATATTGAGGTTCCACCAATTCCAGATAGGCCAATGTCTCTTGGCCATTACATGTTTCCCAGTGGTGATAGTTTTGGGATGAACACAGAATTTGGGTTTGAAGGCTTATCTCGGTTTGAGAATCCATCCTTGAAAAATTGGACTAGAACAAATTGA 1101 0.4133 MASDPVSAAPSSSTNQSICPVSMNYVLTVSWNHSTCLNFQPLPSKQDTSTTTCCKTLLNLFGIALADNLKKTSLFHLPNISTSISCLEDYQSKLTSLLLPNNLVSSCFDPLQFVISPNICANIQTKQDWINRVGPSNTALDTACEPDLTDFARCQYCVNEGYNVQQMVARIDGLIWFKFEDLVKATNNFSPQNFIGRGGSGSVYKGILPDGKMVAVKRIEESDYQGDAEFYREVGIVSSLKHRNLVPLRGCCVVVEHESAEYTGRDIKATNILLDADESSTRNIMERFLLVGILSSHVIAASRPTILDALRMLEGDIEVPPIPDRPMSLGHYMFPSGDSFGMNTEFGFEGLSRFENPSLKNWTRTN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi255g00088 366 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 162 258 - -
Sebi255g00088 366 FunFam Receptor-like serine/threonine-protein kinase At4g25390 157 265 - -
Sebi255g00088 366 Gene3D Phosphorylase Kinase; domain 1 155 261 - -
Sebi255g00088 366 Pfam Protein kinase domain 192 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi255g00088 366 ProSiteProfiles Protein kinase domain profile. 189 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi255g00088 366 ProSitePatterns Protein kinases ATP-binding region signature. 195 217 IPR017441 GO:0005524
Sebi255g00088 366 Pfam SPARK 15 166 IPR043891 -
Sebi255g00088 366 SUPERFAMILY Protein kinase-like (PK-like) 163 277 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi255g00088 Sebi-Chr255 951855 953767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi255g00088 279 331 Receptor kinase-like Gene Family AT1G11050 73.585 9.96e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Sebi255g00088 SPARK 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi255g00088 - - lja:Lj4g3v2693570.1 240.736