Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi255g00065 ATGGCCGACAAATTTGTTCTGTTTCGATATACTATGAACGAGCTAAGTACATTGGTTGAAGCATTAGAAGGAGAACCCCATGCTATTAAAGTGTGGGCAAATATAATCACTGGAATGGCTTCTGCTAATGCTGAGGAGGCTTGCGTGTATGAAAAAGATGTGGAGAGTGCCATGTGCAAAATCAAGAGTTATGAAGAAGGGAAAAGCTCAACTAGTTATGCAGGAATTAATGACAAATCAAATTCAAATGTACCTAGCAGTCATTACAGTTACATTTCTTCAGAGTTGGTCCATTCAGAGTCTCATCATGAAACTTCTAGTACACCAAATGAGACTATAGATTGTCATAAGGGCAATATGAATGATAAAAACTTGGTCATGGAGCAGGGAGGTTCTGTGGATCTGAATAGTGATGTTATACCAGGTGAACCTGAAAATTATTTGCCAAATATTGCTGACAGCCATCACAATAAGGGTGTTCAATATGTGGAAAAAGTCTGCTATGCAGAGGCCAGAAAGGAAGATAAAAACATGAAAATGAATCCTGGTGGCATTGCTGTCTTGGAGAAAGATTTTTCCCCATGTTCAAGTGATGTTCGAAATACACTTGATGGTTGTAAATTGTTTGGGATAGATCTGAATATGCATTCAGATTCAGGAGAGCAACTCAACAATGTATTAAAAATGGGAGTTGTAGACACCTCCAATACAAGCTCTGTTGTGTATGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCAGCAAGCACCTGTAATTATGTTTCTGAAGTCATTGACGCTGGATTTATTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAATGAGGCTTTTTCAAACACCTCAGTAGATAAGTGCTGGGAAACAGTTTTTGACAGACTAACTCATGAAATCAAGAGGCGAAGGAGTCTAGGTGAACAAGAACTTCCTCCCTTGGAACTTCTGCAAAGCATCAACGGTCATAGAATGTTTGGATTCCTCTCGCCATCCATTATTCAGTCAATTGAAGCTCAAGATCCTGGTCATCAATGTGTAGAGTACTGGAACCACAAAGGAGTTCTTTCTGATTCTTCAGGCAGGGAAATTGATGACAAGTTCACTCATGGTTCAAGTAACTCTCTAGGTAACATCAAAACCAAACTTTTTGGTGTTGATTTGATAAAGCTGGAGGAAGATAACATTGGAGAAAGTTGTCATTCATTTGAAGAGATGAAATTGATGCTACAAGGATTCTTAAAAAAGGCAAGTCCTGATGAGTTAGTTGCAATGCAGAAGCTATTCAACTCTGATGCACAATTAACTCAGTGGAGAGTGGCAATTGTAACGCTGATCGAGGAAATCCAGAAGGCTTGTGTTGTGCATAACCAAAATTAG 1443 0.3915 MADKFVLFRYTMNELSTLVEALEGEPHAIKVWANIITGMASANAEEACVYEKDVESAMCKIKSYEEGKSSTSYAGINDKSNSNVPSSHYSYISSELVHSESHHETSSTPNETIDCHKGNMNDKNLVMEQGGSVDLNSDVIPGEPENYLPNIADSHHNKGVQYVEKVCYAEARKEDKNMKMNPGGIAVLEKDFSPCSSDVRNTLDGCKLFGIDLNMHSDSGEQLNNVLKMGVVDTSNTSSVVYGKLWCSKHAIYPKGFKSRVKFFSILDPASTCNYVSEVIDAGFIGPLFKVTMEEHPNEAFSNTSVDKCWETVFDRLTHEIKRRRSLGEQELPPLELLQSINGHRMFGFLSPSIIQSIEAQDPGHQCVEYWNHKGVLSDSSGREIDDKFTHGSSNSLGNIKTKLFGVDLIKLEEDNIGESCHSFEEMKLMLQGFLKKASPDELVAMQKLFNSDAQLTQWRVAIVTLIEEIQKACVVHNQN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi255g00065 480 SMART fyrn_3 238 282 IPR003888 GO:0005634
Sebi255g00065 480 ProSiteProfiles FYR domain FYRN motif profile. 224 282 IPR003888 GO:0005634
Sebi255g00065 480 SMART fyrc_3 288 383 IPR003889 GO:0005634
Sebi255g00065 480 Pfam F/Y rich C-terminus 286 372 IPR003889 GO:0005634
Sebi255g00065 480 Gene3D - 225 368 - -
Sebi255g00065 480 ProSiteProfiles FYR domain FYRC motif profile. 284 374 IPR003889 GO:0005634
Sebi255g00065 480 FunFam Putative lysine-specific demethylase JMJ16 230 368 - -
Sebi255g00065 480 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 248 387 IPR040092 -
Sebi255g00065 480 Pfam F/Y-rich N-terminus 240 279 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi255g00065 Sebi-Chr255 704956 707290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi255g00065 3 471 JUMONJI Transcription Factor Family AT4G20400 32.985 5.54e-60 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi255g00065 K11446 - gmx:100814590 669.463