Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi255g00031 ATGGGGAAGAGGGTAACGACCGCGCCGCCGGTCACCGGAGGACATATTCACGTTCAGTTTCATGGACCTGACCGGTCTCCGGCTACCCGGAAGCCTCCACCGGCGGCGAATAACAAGCCAAGACCGTTGCTGCCACCCCTTCAGCCTCTTTCCATCAACAAACGTAGCGTTGAGGAGTGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTGCACAGACTCCAAGAGGGTCCATCACAGATTCGGGTCGACCCGGGAAGGAGTTTCAGCTGAAGAAGGACAAATTGGCCTTCTATGACAAGGAGTGTTCGAGAATTGCAGAGCATGTGTACCTGGGAAGTGACACGGTGGCGAAGAACCATGAGCTTCTGAGGCAGAAAGGGATCACTCATGTGCTCAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAGAGTGATTTTGTGTATAAGACACTTTGGTTGCAGGATAGTCCTTCAGAGGACATCACTAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGACAGCAAGGTGGGCGTGTCCTTGTCCATTGTTGTCAAGGGGTTTCTAGATCAACCTCTTTGGTGATTGCTTATCTCATGTGGAGGGAAGGACAGAGTTTTGAAGATGCTTTTCAGTATGTGAAGAATGCAAGGGGTGTTACTAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAAAGGGTACATGCTATGCCTGCTAGTCCAAATTCTATTCTTAGGATGTATAGGATGGCTCCTCATTCTCCTTATGACCCTCTTCATTTGGTCCCCAAAATGGTTAACCAGCCTTGTGCTAAAGCACTTGATTCTCGTGGGGCGTTTATTATCCATGTTCCTTCTGCTATATATGTATGGATTGGGAAAATTTGTAGTTCTGTCATGGGTTGTAATGCAAGGTCAGCAGCCATTCAGGTCATCCGTTATGAGAAGGCAACGGGTCCAATTCTTAGCATCCATGAAGATGAAGAGCCACTGGAGTTTTGGGTTGCTCTTTCCAACCAGCAATTGTTATCAGGTAATTGTAAGAAAGGAGAGGTCAAGAAGGATATGGTGTTGCCTTCTGAGGAAAGAATGGAGATTGATGATATTGATGTTTCAGTTGATATGGGAATTGGTCCAAGGAAAGTTGATGAATATGATTTGGATTTTGGGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCTGTATCTAATACTGGATCAGAAACTTGCCTTCCTGCTAGAGAAAATGGTTGGGGAAGACTGAGGAGGAAGCTTGCTTGTGGAATCATGAAAGGTTTTTTCACATCCTCCAAATGCTGTGATACAACCTTATCCAAAGATGAATCAAGTGTGAACATGGAAGAAGAAAATCAACATTCTGTAGTTGTTCATCCTTTGCCACCATCATCAAACTCTCTTTATGTTGCAAAGCATAATCTTGAAGTCATGGATCACTTTGTTCCTTGTGTTGATTCATCATTGCCACCAACTCCTCATCGAACATCAGATTCTTTTCCATGTTTTCTAGGTGGTAGCCCAAAATTCAGTTCCAAGTCACCAACACTTTCTCCCTCCAGTTCTGACTATGCCAGTTCCTTCACATTTTCACCTTCTTCAACAAATTGGTCTGATTTGTCACTCATGTCCTCTCGGCAGCCATCACCTTCTGGCCTGGAATCAGCTGAACCCTTTTATTTTAAAGATGCATCTTTCTCAGAAAGAGAAAGATCCCCTTCACCTCACAAAGAAGCTGTCACCTCATCTTCAGAGGCATTTTTGGCTAATGACACATTGGTAGGGACAAACTCTTATTTTCCATGCAAAGGATCATACCCCTCCATTGCAGAGCGCAGAGGGAGTAACCCACCACCTCTCATGTTGCTACCCTCAGTCAGTGAATCATCCCACACTCACAAGATCACGGTAAGATCACAGTCATTCACTTTGCCTGACTTAGATGATAATTTGATGAAGGATGTTAGTTGTAAGAAATCTGATCGTGAACACAGTGGAAAATGGCTAATATCAGATGCAGATATCATCATTACACCTGTTTGA 2100 0.4429 MGKRVTTAPPVTGGHIHVQFHGPDRSPATRKPPPAANNKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLAQTPRGSITDSGRPGKEFQLKKDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPCAKALDSRGAFIIHVPSAIYVWIGKICSSVMGCNARSAAIQVIRYEKATGPILSIHEDEEPLEFWVALSNQQLLSGNCKKGEVKKDMVLPSEERMEIDDIDVSVDMGIGPRKVDEYDLDFGIFHKALAGGVVPPFSVSNTGSETCLPARENGWGRLRRKLACGIMKGFFTSSKCCDTTLSKDESSVNMEEENQHSVVVHPLPPSSNSLYVAKHNLEVMDHFVPCVDSSLPPTPHRTSDSFPCFLGGSPKFSSKSPTLSPSSSDYASSFTFSPSSTNWSDLSLMSSRQPSPSGLESAEPFYFKDASFSERERSPSPHKEAVTSSSEAFLANDTLVGTNSYFPCKGSYPSIAERRGSNPPPLMLLPSVSESSHTHKITVRSQSFTLPDLDDNLMKDVSCKKSDREHSGKWLISDADIIITPV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi255g00031 699 Gene3D Protein tyrosine phosphatase superfamily 87 246 IPR029021 -
Sebi255g00031 699 CDD DSP 105 239 - -
Sebi255g00031 699 SUPERFAMILY Actin depolymerizing proteins 250 353 - -
Sebi255g00031 699 MobiDBLite consensus disorder prediction 27 47 - -
Sebi255g00031 699 Pfam Dual specificity phosphatase, catalytic domain 112 242 IPR000340 GO:0008138|GO:0016311
Sebi255g00031 699 MobiDBLite consensus disorder prediction 1 51 - -
Sebi255g00031 699 ProSiteProfiles Dual specificity protein phosphatase domain profile. 104 246 IPR020422 GO:0006470|GO:0008138
Sebi255g00031 699 SMART dsp_5 104 243 IPR020422 GO:0006470|GO:0008138
Sebi255g00031 699 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 99 246 IPR029021 -
Sebi255g00031 699 PANTHER MKPA PROTEIN 34 653 - -
Sebi255g00031 699 ProSitePatterns Tyrosine specific protein phosphatases active site. 188 198 IPR016130 GO:0016311|GO:0016791
Sebi255g00031 699 Gene3D Severin 256 353 IPR029006 -
Sebi255g00031 699 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 163 224 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi255g00031 Sebi-Chr255 382601 384898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi255g00031 22 140 Protein tyrosine phosphatase (PTP) family AT3G55270 44.928 6.19e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi255g00031 - - tpra:123917031 854.358