Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi255g00020 ATGGGGAGAACCAAAGTTTCCACTCTCTTCTCTGCTCCTGCTAATAACCACCACTACACACTTCCTCTTTCCAACCCCATAAGCCAAACTCTTTTGAACAGGCCAAATATCCATAAAAATTCATTCCCTTCTTCACTCTTAGGATTATTCAAGCGCCTCATCTATGGAAGGAAAGTTGATGGAGGCTCACGAACTGAAGAAGAAGAGAAAGTCTATTCTTGGTTATACACATTGGCCCAGTCTGAAAAGGACTTGGCATTCGAGTATGTTACGTCCACAGAAAGAGGTGTTCTTCAATTCTATTCAGGCTTAACTTTCACTGAAGCTGAGAGGAGGCTGAGGGAAAATGGCCCAAATGTTCCACTTGAGTATTCTTTTCCAAGATGGTGGCATCTTCTATGGAATGCTCTTTTCCATCCTTTTAATATCATTCTGGTTGTTTTATCTGCTCTGTCATTCATTGCTCGTGATAATCCAAATGGATGTATCATGCTCATATTGGTTTTTATCAGTGTCACACTCCGTTTCTGGCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAGTTTGTAAGATGCCCAATAAAAGTTCAAAGATGTGCTGGTAGAGTTGTGCAGAAAGAATTAATAGTTCAAGTTGATCACAGGGATGTAGTTCCAGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCTGGAGATGTCAGATTGTTATCTTCAAAACATCTTGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGACCACTGAGAAAACTGCTGATGTTAGGGAAGATCACAACACCCCTTTATTAGATTTAAAGAACATATGCTTTATGGGCACAAACGTGGTATCAGGTGCTGGAACAGGTTTAGTTATTTCAACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGACTTTGAAAAGGGTCTCAAATGGATATTTTATTTGCTTATTTCTGTTATGCTAGTAGTTGTTACAATTGTATTTGTAACAGATTACACTGCATCTCAAAATTTGAGCGTAAGTATTCTCTTTGCAATCTCAGTAGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCAATGGCTAAAGACAGATGTATAGTGAAAAGCTTAACAGCTATACGCGAGATGGGATCAATGGATATCCTCTGTATTGACAAAACAGGCACCCTTACAATGAATCATGCAATCTTGGTTAATCATCTTGACTATAGGGGTTTACCCCAAGAAAAAGTTCTACGCTATGCCTTCCTCAATTCTTACTTTAAGACTGATCAGAAGTATCCTCTAGATGATGCAATTCTGGCATATGTATATTCAAATGGATTCAGGTTTCAACCATCCAAGTGGAAAAAGATAGATGAGATTCCTTTTGACTTCATTAGAAGAAGAGTGTCTATCATCATAGAAACAGAAGACAGACACTCTCAGTTCTTTGGCAGGTTCATGGTAACAAAAGGAGCATTGTTGGAAGTCATGAGAGTTTGTTCCTTTATTGAGAATTTTGACAAAGATGAAATTTCCACCTTCTCTTCAGATGACTATCAGAGGATTTTAAATCTGTCAGAAGAATTGAGCAATGAAGGATTAAGGGTTATAGGAGTAGCTATAAAGAAGCTGGAAATGCAGCAAGCATGTGAAACAAGTAATGGAAGCAAGAGGGGTTTGGTGGATTTTGAAAGAGACATGATGTTTCTTGGCCTCATAGCATTTTTTGACCCACCTAAGGACTCAGCAAAGCAAGCACTATGGCGTTTAGCTGAGAAGGGAGTGAAAGCAAAGGTTTTAACAGGTGATTCTCTCAGCTTGGCAACAAGGGTATGCAGGGAAGTTGGCATAAAGACCACTCATGTAATAACAGGACCTGAGCTAGAGCAACTTGACCAAGACAGTTTCCATGAGACTGTTAAAAGAGCCACAGTACTAGCTCGTCTCACCCCAACTCAGAAACTCCGAGTGGTACAATCCTTGCAAACAATAGGAAACCATATTGTTGGATTCTTAGGAGATGGAGTGAATGATTCACTTGCTTTGGATGCTGCACATGTAAGCATTTCAGTGGACTCAGGGGTTGCAATTGCCAAAGACATGGCAGATATTATCTTACTTGAGAAAGATCTCAATGTGCTTGTTGCAGGAGTGGAGCATGGTAGACTCACCTTTGGCAACACAATGAAATATGTAAAGATGTCAGTTATTGCTAACTTGGGAAGTGTCATTTCACTTCTCATAGCATCACTGTGCCTCAAGTATGAGCCTTTGACTTCAAGACAGCTTCTTACTCAGAATTTCATCTACAGTGTGGGACAGATAGCCATCCCTTGGGACAAGATGGATGAAGAGTATGTGAAGACTCCTCATAAGTTATCAGAGAAAGGCTTGCCTATGTTCATATTGTGGAATGGACCAGTGTGCACTCTCTGTGATGGGGCAACACTTATGTTTCTTTGGTTCTATTACAAGGCTTATGATGATGTGGATGAGAAATTTTTCCATACAGCTTGGTTCATTGAGGGTCTTCTCATGCAGACTCTCATTATCCACTTGATCAGGACAGAGAAAATCCCTTTCATACAGGATATTGCTTCTTGGCCTGTGATTTTCTCCACTCTTGTTGTATCTGCAGTTGGGATTGCATTTCCATTCACACCTATTGGAAAGGTCATGGGATTCATACTTCTACCCCTCTCATATTTTGGATTTTTGGCTGTTCTTTTTGTGGGATATTTTATAGTTGGCCAGGTGGTTAAGAGACTTTACATAAAAGTTTATAAGAGATGGCTTTGA 2868 0.4034 MGRTKVSTLFSAPANNHHYTLPLSNPISQTLLNRPNIHKNSFPSSLLGLFKRLIYGRKVDGGSRTEEEEKVYSWLYTLAQSEKDLAFEYVTSTERGVLQFYSGLTFTEAERRLRENGPNVPLEYSFPRWWHLLWNALFHPFNIILVVLSALSFIARDNPNGCIMLILVFISVTLRFWQEYSSSKAAMKLSEFVRCPIKVQRCAGRVVQKELIVQVDHRDVVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQASLTGESWTTEKTADVREDHNTPLLDLKNICFMGTNVVSGAGTGLVISTGSNTYMSTMFSKVGKKKPPDDFEKGLKWIFYLLISVMLVVVTIVFVTDYTASQNLSVSILFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTAIREMGSMDILCIDKTGTLTMNHAILVNHLDYRGLPQEKVLRYAFLNSYFKTDQKYPLDDAILAYVYSNGFRFQPSKWKKIDEIPFDFIRRRVSIIIETEDRHSQFFGRFMVTKGALLEVMRVCSFIENFDKDEISTFSSDDYQRILNLSEELSNEGLRVIGVAIKKLEMQQACETSNGSKRGLVDFERDMMFLGLIAFFDPPKDSAKQALWRLAEKGVKAKVLTGDSLSLATRVCREVGIKTTHVITGPELEQLDQDSFHETVKRATVLARLTPTQKLRVVQSLQTIGNHIVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIASLCLKYEPLTSRQLLTQNFIYSVGQIAIPWDKMDEEYVKTPHKLSEKGLPMFILWNGPVCTLCDGATLMFLWFYYKAYDDVDEKFFHTAWFIEGLLMQTLIIHLIRTEKIPFIQDIASWPVIFSTLVVSAVGIAFPFTPIGKVMGFILLPLSYFGFLAVLFVGYFIVGQVVKRLYIKVYKRWL 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi255g00020 955 SUPERFAMILY HAD-like 583 743 IPR036412 -
Sebi255g00020 955 Gene3D - 423 599 IPR023299 GO:0000166
Sebi255g00020 955 PANTHER CATION TRANSPORTING ATPASE 83 946 - -
Sebi255g00020 955 Pfam haloacid dehalogenase-like hydrolase 407 708 - -
Sebi255g00020 955 NCBIfam magnesium-translocating P-type ATPase 100 954 IPR006415 GO:0015444|GO:0015693|GO:0016020
Sebi255g00020 955 Pfam Cation transporter/ATPase, N-terminus 101 152 IPR004014 -
Sebi255g00020 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 413 419 IPR018303 -
Sebi255g00020 955 Gene3D - 408 732 IPR023214 -
Sebi255g00020 955 Pfam E1-E2 ATPase 205 390 - -
Sebi255g00020 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 101 952 IPR023298 -
Sebi255g00020 955 Gene3D - 161 904 - -
Sebi255g00020 955 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 404 602 IPR023299 GO:0000166
Sebi255g00020 955 SUPERFAMILY Calcium ATPase, transduction domain A 205 310 IPR008250 -
Sebi255g00020 955 SFLD Haloacid Dehalogenase 393 745 - -
Sebi255g00020 955 Gene3D - 195 299 - -
Sebi255g00020 955 SFLD p-type atpase 393 745 IPR044492 -
Sebi255g00020 955 NCBIfam HAD-IC family P-type ATPase 662 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi255g00020 955 NCBIfam HAD-IC family P-type ATPase 164 456 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi255g00020 955 SMART Cation_ATPase_N_a_2 77 157 IPR004014 -
Sebi255g00020 955 PRINTS Magnesium-transporting ATPase signature 771 782 IPR006415 GO:0015444|GO:0015693|GO:0016020
Sebi255g00020 955 PRINTS Magnesium-transporting ATPase signature 823 839 IPR006415 GO:0015444|GO:0015693|GO:0016020
Sebi255g00020 955 PRINTS Magnesium-transporting ATPase signature 858 879 IPR006415 GO:0015444|GO:0015693|GO:0016020
Sebi255g00020 955 PRINTS Magnesium-transporting ATPase signature 445 458 IPR006415 GO:0015444|GO:0015693|GO:0016020
Sebi255g00020 955 PRINTS Magnesium-transporting ATPase signature 908 929 IPR006415 GO:0015444|GO:0015693|GO:0016020
Sebi255g00020 955 PRINTS Magnesium-transporting ATPase signature 803 816 IPR006415 GO:0015444|GO:0015693|GO:0016020
Sebi255g00020 955 PRINTS Magnesium-transporting ATPase signature 324 340 IPR006415 GO:0015444|GO:0015693|GO:0016020
Sebi255g00020 955 PRINTS Magnesium-transporting ATPase signature 753 768 IPR006415 GO:0015444|GO:0015693|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi255g00020 Sebi-Chr255 247072 252463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi255g00020 97 818 Primary Pumps ATPases(2) AT1G10130 26.602 2.23e-62 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi255g00020 K01531 - gmx:100795153 1604.73