Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi255g00017 ATGGGTGAAGAGGGAGAAGAAGTGGTGTTGAGAAAGAAGGAACACATGGGAGTTATTGGAGATAATTGGTTGTATGTACTCATGAAGAGACTTGGCAGCTCCGATTCTTTGGGTGCTCTCATGACAATTTGTCCACCAACAGACGAACAAAGTCCAAGGAACAACCACGTGTATGGTAGGGATTTTCAGTCCATGTTGGAAGGACTTGATGAGGAAGGGTGTGTTGAAGAATCAGGGCATCAATCTGAGAAGAAAAGGAGACTAAGTGTTGATCAAGTCAAGGCTTTGGAGAAGAACTTTGAGGTAGAAAACAAGCTTGAACCAGAAAGGAAGGTGAAGCTTGCTCAAGAGCTTGGCTTGCAACCAAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTAGAAAGAGACTATGGTGTTCTGAAAGCCAATTATGACACACTTAAACTTAACTATGACACCCTCCAACGAGACAATGAATCCTTACTCAAAGAGATTAAGGAATTGAAATCAAGGCTTGAAGAGGAAAACAGTGAAAGTGGTGCTTCAGTGAAGGAAGAGATGATGACAACCCTGCAAGACTCAGAATACAAAATGAACACAGTTTCTGAAACCCCAATTCCTGGATCCGATTCTAAGGATTTAAGTTATGAATGCTTCAACAATAGTTGTGATGGGGTGGGAGGAGAAGGAGGGGTTGGAGTTTCAGCGCTCTTCCCTGTAGACTTCAATAAAGATGGTTCTTCAGATAGTGACTCAAGCGCAATCTTGAATGAAGAGAATATTAACAATAGCCCAAACGCAGCGATTTCTTCATCTGGGGTTCTTCAAAGTCACAACCTTTTGATGTCTCCTGGGTCGTCTTCGCTCAAATTCAATTGCTCCTCATCGTCATCGCCTTCATCGATGAACTGCTTCCAGTTCCAGAAGCAGTACCAAACACACTATGTGAAGATGGAAGAGAACAATTTTCTCAGTGCAGATGAGGCCTGCAATTTCTTCTCAGATGAACAAGCACCGACCCTGCAGTGGTACTGTTCGGAAGAGTGGAGTTAA 1077 0.4318 MGEEGEEVVLRKKEHMGVIGDNWLYVLMKRLGSSDSLGALMTICPPTDEQSPRNNHVYGRDFQSMLEGLDEEGCVEESGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTLKLNYDTLQRDNESLLKEIKELKSRLEEENSESGASVKEEMMTTLQDSEYKMNTVSETPIPGSDSKDLSYECFNNSCDGVGGEGGVGVSALFPVDFNKDGSSDSDSSAILNEENINNSPNAAISSSGVLQSHNLLMSPGSSSLKFNCSSSSSPSSMNCFQFQKQYQTHYVKMEENNFLSADEACNFFSDEQAPTLQWYCSEEWS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi255g00017 358 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Sebi255g00017 358 FunFam Homeobox-leucine zipper protein HAT5 77 141 - -
Sebi255g00017 358 Coils Coil 152 186 - -
Sebi255g00017 358 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 75 330 IPR045224 GO:0003700
Sebi255g00017 358 Pfam Homeobox associated leucine zipper 139 180 IPR003106 GO:0006355|GO:0043565
Sebi255g00017 358 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Sebi255g00017 358 CDD homeodomain 84 140 IPR001356 GO:0003677
Sebi255g00017 358 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Sebi255g00017 358 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Sebi255g00017 358 SMART HOX_1 82 143 IPR001356 GO:0003677
Sebi255g00017 358 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Sebi255g00017 358 SUPERFAMILY Homeodomain-like 66 141 IPR009057 -
Sebi255g00017 358 Gene3D - 55 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi255g00017 Sebi-Chr255 208108 209688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi255g00017 27 354 Homeobox Transcription Factor Family AT2G22430 46.957 4.92e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi255g00017 Homeodomain 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi255g00017 K09338 - gmx:100796213 476.092